Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq1329 131 3e-25 seq23 127 4e-24 seq3127 91.5 3e-13 seq5173 87.8 4e-12 seq1227 87.8 4e-12 seq186 87.8 4e-12 seq101 87.8 4e-12 seq64 87.8 4e-12 seq37 87.8 4e-12 seq35 87.8 4e-12 seq19 87.8 4e-12 seq14 87.8 4e-12 seq11 87.8 4e-12 seq5 87.8 4e-12 seq1 87.8 4e-12 seq2 84.2 4e-11 >seq1329 Length=54940 Score = 131 bits (144), Expect = 3e-25 Identities = 203/288 (70%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 218518 GACTTCATCGACAAGGAGCTCAT--TCTTTTCTC--GCGGTATGATGTGGAGCGTTCTAT 218573 || ||||| |||||||||| || | |||||| |||| || | | | ||||| Sbjct 31535 GATTTCATTAACAAGGAGCTTATATTGTTTTCTATGGCGG----ATCTTCAAAGATCTAT 31590 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 ||| |||| |||||||| ||||| ||| | |||||||| || | || || Sbjct 31591 TCCTTCAATGGTTGATGGCCTGAAGCCTGGTCAGAGGAAGATCCTTTTCTGTTCTTTTAA 31650 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 | |||| | || ||||| || || | ||||| ||||||||||||||||| ||| Sbjct 31651 GAGGAATTTTGTCAAAGAAGCGAAAGTTTCCCAGTTCTCTGGTTATGTATCCGAGCATTC 31710 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 || || ||||| |||||||||||||| || | || | || ||||||||||| | Sbjct 31711 TGCTTATCATCATGGTGAGCAGAGTCTTGCCAGTACAATCATTGGAATGGCACAGGATTT 31770 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 ||| ||||| |||||||| ||| | || || || || ||||| ||||| Sbjct 31771 TGTTGGCAGCAACAACATTAACCTTCTTCTGCCAAATGGTCAATTTGG 31818 >seq23 Length=2045696 Score = 127 bits (140), Expect = 4e-24 Identities = 206/294 (70%), Gaps = 8/294 (3%) Strand=Plus/Minus Query 218518 GACTTCATCGACAAGGAGCTCAT--TCTTTTCTC--GCGGTATGATGTGGAGCGTTCTAT 218573 || ||||| |||||||||| || | |||||| |||| || | | | ||||| Sbjct 371578 GATTTCATTAACAAGGAGCTTATATTGTTTTCTATGGCGG----ATCTTCAAAGATCTAT 371523 Query 218574 TCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAA 218633 ||| |||| |||||||| ||||| ||| | |||||||| || | || || Sbjct 371522 TCCTTCAATGGTTGATGGCCTGAAGCCTGGTCAGAGGAAGATCCTTTTCTGTTCTTTTAA 371463 Query 218634 GCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTC 218693 | |||| | || ||||| || || | ||||| ||||||||||||||||| ||| Sbjct 371462 GAGGAATTTTGTCAAAGAAGCGAAAGTTTCCCAGTTCTCTGGTTATGTATCCGAGCATTC 371403 Query 218694 TGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTA 218753 || || ||||| || ||||||||||| ||| |||| | || |||||||| || | Sbjct 371402 TGCTTATCATCATGGAGAGCAGAGTCTTGCCGGTACCATCATTGGAATGGCACAAGATTT 371343 Query 218754 TGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCG 218807 ||| |||||||| ||||| ||| | || | || || ||||| ||||| |||| Sbjct 371342 TGTTGGCAGTAATAACATTAACCTTCTTCAGCCAAATGGTCAATTTGGCACTCG 371289 >seq3127 Length=14404 Score = 91.5 bits (100), Expect = 3e-13 Identities = 62/70 (89%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 || ||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||| Sbjct 10304 AGGTAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 10363 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 10364 CGAGCCCCAC 10373 >seq5173 Length=4451 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 407 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 348 Query 142563 CCCCAC 142568 |||||| Sbjct 347 CCCCAC 342 >seq1227 Length=61460 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 36276 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 36335 Query 142563 CCCCAC 142568 |||||| Sbjct 36336 CCCCAC 36341 >seq186 Length=537520 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 259810 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 259869 Query 142563 CCCCAC 142568 |||||| Sbjct 259870 CCCCAC 259875 >seq101 Length=837928 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 625991 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 626050 Query 142563 CCCCAC 142568 |||||| Sbjct 626051 CCCCAC 626056 >seq64 Length=1126094 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 107372 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 107431 Query 142563 CCCCAC 142568 |||||| Sbjct 107432 CCCCAC 107437 >seq37 Length=1716566 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 453341 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 453282 Query 142563 CCCCAC 142568 |||||| Sbjct 453281 CCCCAC 453276 >seq35 Length=1803696 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 99201 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 99142 Query 142563 CCCCAC 142568 |||||| Sbjct 99141 CCCCAC 99136 >seq19 Length=2214699 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2100312 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2100253 Query 142563 CCCCAC 142568 |||||| Sbjct 2100252 CCCCAC 2100247 >seq14 Length=2767599 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 843810 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 843869 Query 142563 CCCCAC 142568 |||||| Sbjct 843870 CCCCAC 843875 >seq11 Length=3126061 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2551901 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2551960 Query 142563 CCCCAC 142568 |||||| Sbjct 2551961 CCCCAC 2551966 >seq5 Length=4750240 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 190815 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 190874 Query 142563 CCCCAC 142568 |||||| Sbjct 190875 CCCCAC 190880 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4523602 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4523543 Query 142563 CCCCAC 142568 |||||| Sbjct 4523542 CCCCAC 4523537 >seq1 Length=8759900 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 833695 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 833754 Query 142563 CCCCAC 142568 |||||| Sbjct 833755 CCCCAC 833760 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 2093745 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAA 2093686 Query 142563 CCCCAC 142568 |||||| Sbjct 2093685 CCCCAC 2093680 >seq2 Length=8082884 Score = 84.2 bits (92), Expect = 4e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| | ||||||||||||||||| Sbjct 3678635 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACTTTGTGGTCGTGGGTTCGAG 3678576 Query 142563 CCCCAC 142568 ||| || Sbjct 3678575 CCCTAC 3678570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027710178536215