Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq70 102 6e-17 seq26 98.7 7e-16 seq189 95.1 9e-15 seq311 91.5 1e-13 seq78 91.5 1e-13 seq1471 86.0 4e-12 >seq70 Length=1087276 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || || || || || ||||| ||| |||| ||| | | Sbjct 269060 ATGCAAATTTTTGTGAAGACTTTGACTGGGAAGACCATCACCTTGGAGGTGGAGAGCTCC 269119 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||| ||||||||||| | ||| | ||||| Sbjct 269120 GACACCATTGATAATGTCAAGGCTAAAATCCAAGATAAAGAGGGCATCCCTCCAGACCAA 269179 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||||||||| ||||| || ||| ||| | || |||||||| Sbjct 269180 CAGAGGCTCATCTTTGCTGGCAAGCAACTCGAGGATGGGCGCACTCTCGCTGATTACAAC 269239 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || |||||||| || || |||||| |||| Sbjct 269240 ATCCAGAAGGAGTCCACCCTTCATTTGGT 269268 >seq26 Length=1968749 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || ||| | ||||| || ||||| ||| |||| ||| | | Sbjct 78925 ATGCAGATCTTTGTCAAGACACTCACGGGGAAGACCATCACCTTGGAGGTGGAGAGCTCT 78984 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| ||||| ||||| ||||| | ||| | ||||| Sbjct 78985 GACACCATTGATAATGTCAAGGCCAAAATCCAAGATAAGGAGGGCATCCCTCCAGACCAA 79044 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||||||||| ||||| || ||| ||| | || |||||||| Sbjct 79045 CAGAGGCTCATCTTTGCTGGCAAGCAACTTGAGGATGGGCGTACTCTAGCTGATTACAAC 79104 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||| ||||| || || |||| Sbjct 79105 ATTCAGAAGGAGTCTACCCTCCACTTGGT 79133 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || || || || || || |||||| |||| || | | Sbjct 78697 ATGCAGATTTTCGTGAAGACTTTGACTGGGAAGACTATTACCTTGGAGGTAGAGAGCTCT 78756 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | ||| |||||| || |||||||| | || | | ||| Sbjct 78757 GACACCATCGATAATGTCAAGGCAAAAATCCAGGACAAAGAGGGCATCCCCCCAGATCAA 78816 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||||||||| || || || ||| | ||| | || || ||||| Sbjct 78817 CAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAGGATGGACGCACTCTTGCTGACTACAAC 78876 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| ||||||||||| |||| | || || || ||||| Sbjct 78877 ATTCAGAAGGAGTCTACTCTTCACTTGGTGCTGCGCTTGCGTGGAGG 78923 >seq189 Length=529659 Score = 95.1 bits (104), Expect = 9e-15 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 21949 ACCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATT 22008 |||| ||||| |||||||||||||| || ||| |||| ||| | ||| | || |||| Sbjct 461874 ACCAGCAGAGGCTTATCTTTGCTGGGAAGCAATTAGAGGATGGGAGGACTCTTGCGGATT 461933 Query 22009 ACAATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||||||||||| |||||||| ||| | || | ||| | ||||| || Sbjct 461934 ACAATATTCAGAAGGAGTCTACTCTCCATCTCGTGCTCCGTCTTCGAGGTGG 461985 >seq311 Length=316158 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| || ||||||| || || || ||||||||| || || | || ||||| Sbjct 207304 CAGCAGAGGCTAATCTTTGTAGGGAAGCAGCTAGAAGATGGAAGGACCCTTGCTGATTAT 207245 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| ||||| |||||||||||| |||| | |||||| ||||||| Sbjct 207244 AATATTCAAAAGGAGTCTACTCTTCATCTGGTGCTGCGTTTAAGAGGAGG 207195 >seq78 Length=1009284 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || || |||||||||||||||||||| || |||||| || || | || || || Sbjct 201226 CAGCAAAGGCTTATCTTTGCTGGCAAACAGCTTGAAGATGGAAGGACCCTTGCTGACTAT 201167 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||||||||||| ||| |||| | ||| | || || || Sbjct 201166 AATATTCAGAAGGAATCTACTCTGCATTTGGTGCTTCGTCTGCGTGGTGG 201117 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || || || ||||| |||||||||||||| || |||||| || || | || || || Sbjct 220830 CAGCAAAGGCTTATTTTTGCTGGCAAACAGCTTGAAGATGGAAGGACCCTTGCTGACTAT 220771 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||||||||||||||| ||| |||| | ||| | || || || Sbjct 220770 AATATTCAGAAGGAATCTACTCTGCATTTGGTGCTTCGTCTGCGTGGTGG 220721 >seq1471 Length=47346 Score = 86.0 bits (94), Expect = 4e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| || ||||||| || || || ||||| ||| || || | || ||||| Sbjct 5718 CAGCAGAGGCTAATCTTTGTAGGGAAGCAGCTAGACGATGGAAGGACCCTTGCTGATTAT 5659 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 |||||||| ||||| |||||||||||| |||| | |||||| ||||||| Sbjct 5658 AATATTCAAAAGGACTCTACTCTTCATCTGGTGCTGCGTTTAAGAGGAGG 5609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358082833928710