Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq435 120 6e-22 seq549 114 2e-20 >seq435 Length=220439 Score = 120 bits (132), Expect = 6e-22 Identities = 347/526 (66%), Gaps = 16/526 (3%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||||||||| |||||||| || || ||| ||||| | ||| | |||||| Sbjct 105056 CTTGCCTTCTTCGCTGCCTCTGATGGAATCGTCCTCGAGAATATCGCCGGGCGTTTCATG 104997 Query 42483 AAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAA 42541 ||||| || || || |||||||| ||| |||||||| |||||||| || || ||||| Sbjct 104996 AAAGAAGTCCAAGTCTCGGAGGCGCG-TGCTTTCTACGGGTTCCAGATCGCGATTGAGAA 104938 Query 42542 CGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCG 42601 | ||||| ||| ||||| || | | || |||||| |||| | ||| Sbjct 104937 TATCCACTCGGAGATGTACAGTCTTTTGTTGGAGACCTACATCAAGGATTCTACTGAGAA 104878 Query 42602 TAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGC 42661 ||| | ||||| | ||||| |||||| |||| || | ||||||||||| ||||| Sbjct 104877 GAACCGTCTGTTTCATGCCATTGAGACGGTGCCGTGTGTGGCTAAGAAGGCGGAGTGGGC 104818 Query 42662 GCTCAACTGGATCGAGAGTCCCGACGC-AACGTTCGGC-GAGAGGCTGGTAGCCTTTACC 42719 | ||||| || | || || | ||| || |||||| | | || ||| | Sbjct 104817 TTTACGGTGGATAGA-----CGGAGGCGAGAGTTTTGCGGAGAGGTTAATCGCATTTGCT 104763 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779 ||| || || || || |||||||| || | || || ||||| || | || Sbjct 104762 TGCGTGGAAGGGATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGCTAAA--AAAAC 104705 Query 42780 GT--GTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 || | ||||| || || |||||||||||||| | ||| | || || ||||| | Sbjct 104704 GTGGGCTAATGCCAGGCCTGACCTTCTCGAACGAGTTGATCTCGCGAGATGAAGGGCTTC 104645 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 || | || || || ||||| || | | |||| | ||| | || | |||||| Sbjct 104644 ATTGTGATTTCGCGTGCCTTCTTTAC---AGCCTGTTGAGGAAGAAACTGAGTGAGGAGC 104588 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 | || || || | | |||||| ||||| || |||| |||||| Sbjct 104587 GCGTGAAGGGGATAGTGAAGGAGGCTGTGGATATAGAGAGGGAGTT 104542 >seq549 Length=172529 Score = 114 bits (126), Expect = 2e-20 Identities = 417/646 (65%), Gaps = 10/646 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || || |||| ||||| || |||||| | || || Sbjct 30291 ATCTGGGAGATGTACAAGAAAGCTGAGGCCTCCTTTTGGACTGCTGAGGAGGTCGATCTC 30350 Query 42360 GCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAA 42418 | ||| | | ||| |||||| ||| || |||| ||| ||| || | Sbjct 30351 TCGTCGGATATCCGCCA-CTGGGAAAACCTGACTCCCGACGAGAAGCACTTCATCTCTCA 30409 Query 42419 CATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTT 42478 | || |||||||||||||||||||| || || ||| || || || ||| | || Sbjct 30410 TGTCCTTGCCTTCTTCGCCGCCTCTGATGGGATTGTCCTCGAAAATCTCGCCGGGCGTTT 30469 Query 42479 CATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAG 42537 |||||||||||| || || |||||||| ||| || ||||| |||||||| || || | Sbjct 30470 CATGAAAGAGGTCCAAGTCTCGGAGGCGCG-TGCTTTTTACGGATTCCAGATCGCGATTG 30528 Query 42538 AGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCG 42597 |||| | ||||| ||| ||||| ||| | | || || ||| |||| | | | Sbjct 30529 AGAATATCCACTCCGAGATGTACAGTCTTCTGTTGGAGACTTATATCAAGGATTCTGAGG 30588 Query 42598 AGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACT 42657 || || | ||||| | || || || ||| |||| ||| | |||||||| | Sbjct 30589 AGAAGAATCGCCTGTTTCATGCTATCGAAACGGTGCCGTGCGTGGCTAAGAAGGCACGGT 30648 Query 42658 GGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 |||| | ||||| || | ||| | |||| || ||||| || || ||| Sbjct 30649 GGGCCTTGCGGTGGATTGACGGGAGCGA---GAGTTTCGCGGAAAGGCTAGTTGCTTTTG 30705 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 | ||| || || || || |||||||| || | || || ||| | || || Sbjct 30706 CTTGCGTGGAAGGGATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGTTAAAAAAGC 30765 Query 42778 AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGC 42837 | || |||||| || || ||||| |||||||| | ||| | || || ||||| | Sbjct 30766 GTGGGTTGATGCCGGGGCTAACCTTTTCGAACGAGTTGATCTCGCGAGATGAAGGGCTTC 30825 Query 42838 ATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGC 42897 || | || || || || |||| ||| ||| || ||| | |||| |||||| Sbjct 30826 ATTGTGATTTCGCGTG---CCTGCTCTACAGCTTGCTGAGGAAGAAGCTGAGTGAGGAGC 30882 Query 42898 GGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 || | | || | | ||| || ||||| || |||| |||||| Sbjct 30883 AAGTGAGAGGGATAGTGAAGGATGCTGTGGATATTGAGAGGGAGTT 30928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944225702232400