Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4913 95.1 1e-14 seq461 91.5 1e-13 seq189 89.7 4e-13 seq26 86.0 5e-12 seq14 86.0 5e-12 >seq4913 Length=5114 Score = 95.1 bits (104), Expect = 1e-14 Identities = 83/100 (83%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 115586 |||||||| |||||||||||||||| ||||||||||||| || ||| |||| |||||| Sbjct 3065 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAATGGATTGTACGATCCAAGGAA 3006 Query 115587 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 ||| ||||||| || |||||| || | ||| || ||||| Sbjct 3005 CCATAACTGATTTAATGAGCCTTTTGCGGTTTCACCTTAA 2966 Score = 95.1 bits (104), Expect = 1e-14 Identities = 83/100 (83%), Gaps = 4/100 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA--GTAAGATCTAAGGAA 114389 |||||||| |||||||||||||||| ||||||||||||| || ||| |||| |||||| Sbjct 3065 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAATGGATTGTACGATCCAAGGAA 3006 Query 114390 CCAAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 ||| ||||||| || |||||| || | ||| || ||||| Sbjct 3005 CCATAACTGATTTAATGAGCCTTTTGCGGTTTCACCTTAA 2966 >seq461 Length=207379 Score = 91.5 bits (100), Expect = 1e-13 Identities = 89/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||||| || || || || ||||| || ||||||||||||||||| |||||||| || Sbjct 160182 ACCTCCTCGGAGACGGAGGACAAGATGGAGGGTGCTCTCCTTCTGAATATTGTAATCGGC 160123 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCC 34014 ||| ||| | || |||| || || ||||| || || || ||||| |||||| Sbjct 160122 CAAAGTTCGGCCATCTTCCAGCTGTTTTCCGGCGAAGATTAGACGCTGTTGATCC 160068 >seq189 Length=529659 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||||| ||||| |||||||| || || |||||| |||||||| ||||| || Sbjct 461757 CCGCCTCTCAAACGCAGTACCAGATGCAGAGTAGACTCCTTTTGAATGTTATAATCCGC- 461699 Query 33961 AATTGTCG-CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || ||| | | || ||||| ||||| || ||||| || || | |||||||||| || Sbjct 461698 AAGAGTCCTCCCCTCTTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCGGGGG 461639 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | | || |||||| ||| || |||| | | | |||||| ||| Sbjct 461638 AATCCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTATCAATTGTATCAGAGCTTTCAAC 461579 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||| ||||| ||||| |||| || || || ||||||||||| Sbjct 461578 CTCAAGCGTGATTGTCTTTCCAGTTAAAGTCTTAACGAAGATTTGCAT 461531 >seq26 Length=1968749 Score = 86.0 bits (94), Expect = 5e-12 Identities = 108/146 (74%), Gaps = 2/146 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | || |||||||||| ||||| || |||||||||||||||||| || || Sbjct 78924 ACCTCCACGCAAGCGCAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGC 78865 Query 33960 CA-ATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | | || || | || |||| |||||||| ||||| || || | ||| ||||| | Sbjct 78864 AAGAGTG-CGTCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGGG 78806 Query 34019 GCACGCTCTCTTTGTCCATAATTTTT 34044 | | || |||||||||| |||||| Sbjct 78805 GGATGCCCTCTTTGTCCTGGATTTTT 78780 >seq14 Length=2767599 Score = 86.0 bits (94), Expect = 5e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||||||||||| || |||| ||||| || ||||||||||||||| ||||| | | Sbjct 1620895 CCTCCTCTCAGCCTCAAAACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCAG-C 1620953 Query 33961 AATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATC 34013 || ||| || | || ||||||||||| || ||||| |||| | |||||| || Sbjct 1620954 AAGTGTCCGGCCATCTTCCAATTGCTTACCAGCAAAAATCAACCTCTGCTGGTC 1621007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397015871111230