Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_009603.1 Length=46365 Score E Sequences producing significant alignments: (Bits) Value seq5129 84.2 6e-12 >seq5129 Length=4579 Score = 84.2 bits (92), Expect = 6e-12 Identities = 182/268 (68%), Gaps = 22/268 (8%) Strand=Plus/Minus Query 20690 CCGCCGATGTCTACATCTACGACGAGATCGGTGAGTCGTGGTGGGGCG---GCATCGCCC 20746 ||||||| ||||||||||||| ||| ||||| ||| |||||||||| ||| || Sbjct 357 CCGCCGAGGTCTACATCTACGGCGACATCGGCGAGAGCTGGTGGGGCGAGTCGATCACCG 298 Query 20747 CGAAGGCGCTGGTCGATGAGATCACCGCGCTCGACGTCGCCGAGATGAC------CGTCC 20800 | |||| |||||||| || ||| | ||| |||| || | || ||| |||| Sbjct 297 CCAAGGACGTGGTCGATCAGCTCAATGAGCTGGACGCTGCGGTGAAGACGATCGACGTCT 238 Query 20801 ACATCAACAGCCCCGGCGGGGCCGCATGGGACGGCATCACGATCATGAACGCACT---GC 20857 ||||||||||| |||||| || |||||| | ||||| ||||| || || Sbjct 237 ACATCAACAGCTACGGCGGCAGCGTCAACGACGGCCTGGCGATCTACAACGCGCTCAAGC 178 Query 20858 GCGCCCACAAGGC--GCA----GGTGCACGTGGTCGTCGACGGTCTCGCCGCGTCGGCGG 20911 || ||||| ||| |||||| | ||| ||||| ||||||| | || Sbjct 177 GCAAGGCGAAGGCCGGCATTACCGTGCACACGCACGTGGACGGCATCGCCGC--CAGCAT 120 Query 20912 CGTCGG--TGATCGCGATGGGCGGCGAC 20937 || | | |||||||||||| ||||||| Sbjct 119 CGCCAGCCTGATCGCGATGGCCGGCGAC 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148229473504010