Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq435 96.9 4e-15 seq6087 86.0 7e-12 seq439 86.0 7e-12 >seq435 Length=220439 Score = 96.9 bits (106), Expect = 4e-15 Identities = 371/571 (65%), Gaps = 25/571 (4%) Strand=Plus/Plus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATT--CTCCA 125816 || ||||| || | ||||||||||| ||||||||||| | |||| ||||| ||||| Sbjct 104344 TACTCCCCGACTCTTTTCTCGAAGAAATTTGTCTTCCCTTGCAAG--GATATCAACTCCA 104401 Query 125817 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTGT------TGGCAC-CCCAATCTGTTTG 125869 | |||||||||| || || ||| ||||| | | | ||||| | Sbjct 104402 TCCAATCAAATGGATT-----AG--CCACATTGTACACCTTCCCGCACCCAAGCGCACCC 104454 Query 125870 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATG 125929 | || | ||| | || ||||||| |||| | |||| || ||||| || | Sbjct 104455 AACAGCCTATCAGCTACAAACTCAATATACTGACTCATCAATTCCCCATTCATCCCCACC 104514 Query 125930 AGGTTACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACG 125989 | ||||| |||| ||||| | ||| || |||| || ||||| || ||| ||| Sbjct 104515 AAAGCGCATGGTAGCGAGTCCACCACAAACTCCCTCTCTATATCCACAGCCTCCTTCACT 104574 Query 125990 ATGGCGTGAATGGTGTCCACCCCAGGTCTATTGCGCAA-AGTCT-TGAAGAGTTCCACGG 126047 || | | | | ||| | | || | || | ||| || || | |||| | ||| Sbjct 104575 ATCCCCTTCACGCGCTCCTCACTCAGTTTCTTCCTCAACAGGCTGTAAAGAAGGC-ACGC 104633 Query 126048 CAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTG 126107 ||| || || || || || || || ||||| | || ||||||||| ||| |||| Sbjct 104634 GAAA-TCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGGCCTG 104692 Query 126108 GCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTC 126167 |||| || || || || || | ||| || ||||||||||| |||||||| || || | Sbjct 104693 GCATTAGCCCACGTTTTTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCC 104752 Query 126168 CCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACC 126227 | ||||| || || || || | | | ||| ||||| | || | | ||| | || Sbjct 104753 CTTCCACGCAAGCAAATGCGATTAACCTCTCCGCAAA-ACTCTCGCC--TCCGTCTATCC 104809 Query 126228 ACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGA 126287 || | ||||||| |||||| || | | |||||| || |||| || || | ||| | Sbjct 104810 ACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACA 104869 Query 126288 GTTCCTTCTTTTCTGATGGATCTTTGATGTA 126318 | ||||| || | | ||| |||||||| Sbjct 104870 GACGGTTCTTCTCAGTAGAATCCTTGATGTA 104900 >seq6087 Length=2767 Score = 86.0 bits (94), Expect = 7e-12 Identities = 190/280 (68%), Gaps = 4/280 (1%) Strand=Plus/Plus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933 |||||||| |||||||| || || || || | || || ||||| || ||||| || Sbjct 1604 TCAAAGCCGTCCATCTCGACCAGCAGCTGGTTCAGCGTCTGCTCGCGCTCGTCATTGCCG 1663 Query 10934 G-GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 10992 || | ||| || | ||| || |||||||||||| ||||| |||||||| | ||| Sbjct 1664 CCGCCCAG-ACCGGCGCCGCGATGACGACCGACGGCGTCGATTTCGTCGATGAAGATGAT 1722 Query 10993 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 || || ||| | ||| ||| || || || || || | |||| ||||| || Sbjct 1723 GCAGGGCGCATTCTTCTTGGCCTGTTCGAACATGTCGCGCACGCGGCTGGCGCCGACGCC 1782 Query 11053 CACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCAC 11111 || |||||||| ||||| | | | | | || | || |||||| ||| | ||||| Sbjct 1783 GACGAACATTTCGACAAAGTCCGAACCCG-AGATCGAGAAGAAGGGCACGCCCGCTTCAC 1841 Query 11112 CCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 |||| | || || || || || ||||| || || || || Sbjct 1842 CCGCAACCGCGCGCGCCAGCAGCGTCTTGCCGGTGCCGGG 1881 >seq439 Length=218577 Score = 86.0 bits (94), Expect = 7e-12 Identities = 245/369 (66%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 10789 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 10848 |||||| || ||||| | | | ||| |||||| || || | ||| || || || Sbjct 171252 ATCAAACCGTCCTGGCCTCAACAAGGCAGAGTCAAGAATGTCTGCCCTGTTAGTTGCTGC 171193 Query 10849 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 10908 | ||||| |||||| || | ||||| |||||||| || |||| || || || | Sbjct 171192 AACGACAATGATGCCAGTATTACCCTCAAAACCATCCATTTCTGTCAGAAGCTGGTTAAG 171133 Query 10909 GGTTTGTTCGCGTTCATCATT--CGCGGGCA-TACCACCCGCACTGCGTTGCTTACCGAC 10965 ||| ||||| | ||||||||| | | | || | ||| | || |||| | || || Sbjct 171132 GGTCTGTTCTCTTTCATCATTTCCTCCGCCAATTCCAGTTCCTCT---TTGCCTTCCCAC 171076 Query 10966 GGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC--AAAG 11023 || ||||||||||| | || || || || || || || ||| |||| ||| Sbjct 171075 AGCATCAATTTCATCCACAAATACAATGCAAGGAGCGTTCTCTTTGGC--CTTCTTGAAG 171018 Query 11024 ATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATTGGCGGCGGAA 11083 | ||| ||||||| |||||| ||||| |||||||| || ||||| | | | ||| Sbjct 171017 AGATCCCGGACTCGAGAGGCACCAACACCAACAAACATCTCAACAAACTCCGAACCTGAA 170958 Query 11084 CATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 11142 || | || || || || | |||||| || || || ||| || || |||||||| Sbjct 170957 -ATGGAGAAAAACGGAACACCCGCTTCACCAGCAATTGCCTTGGCCAGAAGAGTCTTCCC 170899 Query 11143 CGTCCCAGG 11151 || || || Sbjct 170898 AGTACCTGG 170890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597281805564200