Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_010355.1 Length=62337 Score E Sequences producing significant alignments: (Bits) Value seq2117 125 3e-24 >seq2117 Length=28532 Score = 125 bits (138), Expect = 3e-24 Identities = 202/283 (71%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 22340 AAGGACGGCGACGGCCAGTACATCTGGCGTCCGGGCCTGGAGGCTGG-CAAGCCGTCCAC 22398 ||||||| |||||| | |||||||||| |||| | | |||||| | || || | | Sbjct 8022 AAGGACGCGGACGGCAACTACATCTGGCAGCCGG-CGGCGCGGCTGGGCGAGACGGCTTC 7964 Query 22399 CCTGCTCGGCTCCCCGGTCTATCAGGCTGCGGACATGCCGGCGGTTGGCGCGGGCGCCCT 22458 | ||||||||| |||||| || | | |||||||| || | || | ||| Sbjct 7963 CTTGCTCGGCTATCCGGTCACCGAGATCGAGACCATGCCGGATGTGGCGGCCAACAGCCT 7904 Query 22459 GCCCATCGCCTTCGGCAACTTCC-GCGCCGGCTACACCGTCGTGGATCG--CCTGGGCAT 22515 | | ||||| |||||| |||||| |||| ||||| |||| || || || ||| | Sbjct 7903 GTCGATCGCGTTCGGCGACTTCCAGCGC-GGCTATCTGATCGTCGACCGGGCCGGGG--T 7847 Query 22516 CACCGTCCTGCGCGACCCCTACTCGGCCAAGCCCTTCGTGGAGTTCTACAGCCGGAAGCG 22575 || |||||||||||||| ||||||||||||| ||| |||||||| ||||| Sbjct 7846 GCGGGTGCTGCGCGACCCCTATTCGGCCAAGCCCTATGTGCTGTTCTACACAACCAAGCG 7787 Query 22576 CGTCGGCGGCGACGTGGTGAACTTCGAAGCCTTCAAGCTGATG 22618 ||| ||||||| ||| ||||||||| ||| ||||| ||||| Sbjct 7786 CGTGGGCGGCGGGGTGCAGAACTTCGACGCCATCAAGGTGATG 7744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 199330239184470