Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq70 107 2e-18 seq93 105 7e-18 seq273 100 3e-16 seq461 96.9 3e-15 seq26 96.9 3e-15 seq663 93.3 4e-14 seq200 93.3 4e-14 seq2 91.5 1e-13 seq189 87.8 2e-12 >seq70 Length=1087276 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | | |||||||| || |||||||| || | ||| ||| |||||| Sbjct 269268 ACCAAATGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGCGAGAGTGCGCCCATCCTCG 269209 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 ||||| || || | | |||| || | ||||||||| ||||| || || ||||| || | Sbjct 269208 AGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGAGGGATGCCCTCTTTATCTTGG 269149 Query 138526 ATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTA 138585 ||||| || | | || | |||||||| ||||||||| | || | || || Sbjct 269148 ATTTTAGCCTTGACATTATCAATGGTGTCGGAGCTCTCCACCTCCAAGGTGATGGTCTTC 269089 Query 138586 CCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||||| ||| || |||||||| ||||| Sbjct 269088 CCAGTCAAAGTCTTCACAAAAATTTGCAT 269060 >seq93 Length=881566 Score = 105 bits (116), Expect = 7e-18 Identities = 143/196 (73%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | ||||| |||||||| ||||| || | Sbjct 480806 GACTCCTTCTGGATGTTGTAGTCAGAAAGTGTACGGCCATCCTCGAGCTGTTTTCCAGCG 480865 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 | || ||||||||||||||||| || |||||||| ||||| ||| | || | ||| Sbjct 480866 AAAATGAGACGCTGTTGGTCCGGTGGGATACCTTCCTTGTC-TTGAATCTTGGCTTTGAC 480924 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||| | ||||| ||||||| || | || || || |||| |||| Sbjct 480925 ATTG-TCGATAGTGTCTGAGGACTCAACCTCGAGGGTTATTGTCTTGCCCGTCAAGGTTT 480983 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 480984 TCACGAAGATCTGCAT 480999 >seq273 Length=351239 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || |||||||| ||||| || | Sbjct 177550 GACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCATCCTCGAGCTGTTTTCCAGCG 177609 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 | || |||||||||||||| || || |||||||| ||||| ||| | || | ||| Sbjct 177610 AAAATGAGACGCTGTTGGTCTGGTGGGATACCTTCCTTGTC-TTGAATCTTGGCTTTGAC 177668 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||| | ||||| ||||||| || | || ||||| |||| |||| Sbjct 177669 ATTG-TCGATCGTGTCTGAGGACTCAACCTCGAGGGTTATTGTCTTACCCGTCAAGGTTT 177727 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 177728 TCACGAAGATCTGCAT 177743 >seq461 Length=207379 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||| ||||| ||| || ||| || || || || ||||| |||| | Sbjct 160146 CTCCTTCTGAATATTGTAATCGGCCAAAGTTCGGCCATCTTCCAGCTGTTTTCCGGCGAA 160087 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||||||||||||||| ||||| || || ||||| ||||| ||| | || | || | | Sbjct 160086 GATTAGACGCTGTTGATCCGGTGGGATGCCTTCCTTGTC-TTGAATCTTGGCCTTGACGT 160028 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 || || | ||||||| | ||||||||| | || | || || || || || ||||| Sbjct 160027 TG-TCGATGGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTTTTC 159969 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 159968 ACGAAGATCTGCAT 159955 >seq26 Length=1968749 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || ||||| |||| || || || | | |||||||| |||||||||||||| Sbjct 78923 CCTCCACGCAAGCGCAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCA 78864 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || || || || | | |||| || | |||||| || || || Sbjct 78863 AGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGGGGG 78804 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| ||||||| || | | || | |||||| | ||| ||| Sbjct 78803 ATGCCCTCTTTGTCCTGGATTTTTGCCTTGACATTATCGATGGTGTCAGAGCTCTCTACC 78744 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || ||||||| ||| || || |||||||||||| Sbjct 78743 TCCAAGGTAATAGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCATG 78696 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 138405 AACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCT 138463 ||| || || | | | |||||||| ||||||||||| || ||| | ||||||| |||| Sbjct 79134 AACCAAGTGGAGGGTAGACTCCTTCTGAATGTTGTAATCAGCT-AGAGTACGCCCATCCT 79076 Query 138464 CGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGG 138523 | ||||| || || | | |||| || | ||||||||| ||||| || || || || || Sbjct 79075 CAAGTTGCTTGCCAGCAAAGATGAGCCTCTGTTGGTCTGGAGGGATGCCCTCCTTATCTT 79016 Query 138524 TGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 |||||| || | | || | |||||| | ||||||||| | || | || | Sbjct 79015 GGATTTTGGCCTTGACATTATCAATGGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCT 78956 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || || || || || ||||| |||||||| Sbjct 78955 TCCCCGTGAGTGTCTTGACAAAGATCTGCAT 78925 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | ||| | ||| ||||| | | | |||||||| || ||||| || || Sbjct 78696 GCCACCTCGAAGACGGAGAACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAGC 78637 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || |||||||| || || |||| | |||||| | || ||||||||||| Sbjct 78636 AAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATTAACCTTTGCTGGTCCGGAGG 78577 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| || || | |||| || | ||||| | ||| | Sbjct 78576 GATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTG-TCAATTGTGTCTGAGCTCTCAA 78518 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | || | || || ||||| || || || |||||||||||||| Sbjct 78517 CTTCCAAGGTGATTGTCTTGCCAGTGAGGGTCTTAACAAAAATCTGCAT 78469 >seq663 Length=136023 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 138423 CTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATA 138482 |||||| ||||| ||||| ||| || ||| || || || || ||||| |||| | Sbjct 60460 CTCCTTCTGAATATTGTAATCGGCCAGAGTCCGACCATCTTCTAGCTGTTTTCCGGCGAA 60519 Query 138483 GATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--T 138540 ||| | ||| ||||| ||||| || || || || ||||| ||| | || | ||| | | Sbjct 60520 GATCAAACGTTGTTGATCCGGCGGGATGCCCTCCTTGTCT-TGAATCTTGGCTTTGACGT 60578 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 ||| | | ||||||| | ||||||||| | || | || || || ||||||||||| Sbjct 60579 TGT-CGATGGTGTCGCTGCTCTCCACCTCAAGGGTTATAGTCTTGCCGGTCAGAGTTTTC 60637 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 60638 ACGAAGATCTGCAT 60651 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 138460 TCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTG 138519 ||||| | || || |||| | |||| ||||||||||| ||||| || || || || ||| Sbjct 59813 TCCTCCAACTGCTTTCCGGCAAAGATCAGACGCTGTTGATCCGGTGGGATGCCCTCCTTG 59872 Query 138520 TCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGC 138579 || ||||||| || | | || | ||||||| | ||||||||| | || | | Sbjct 59873 TCCTGGATTTTTGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCCACCTCCAGTGTAATC 59932 Query 138580 GTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || || || |||| || || |||||||||||||| Sbjct 59933 GTCTTCCCGGTCAAGGTCTTCACAAAAATCTGCAT 59967 >seq200 Length=492930 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/222 (70%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||| |||||||||||||| | ||||| || || |||||||| |||| Sbjct 457277 GATTCCTTCTGAATGTTGTAGTCTGCAAGTGTACGTCCATCTTCTAGTTGTTTCCCGGCG 457336 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 | || ||||| || ||||| || || || ||||| ||||| |||||| ||| | | Sbjct 457337 AAAATAAGACGTTGCTGGTCTGGTGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTGACA 457396 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | || || | || || ||||||| || | || || || |||| ||||| Sbjct 457397 TTG-TCGATTGTATCTGAAGATTCTACCTCGAGGGTTATGGTCTTCCCCGTCAAGGTTTT 457455 Query 138600 TACAAAAATCTGCATGGCTTATAATATTATTCCGTTCCTCTT 138641 || || ||||||||| ||| | | || || | |||||||| Sbjct 457456 CACGAAGATCTGCATGTCTTCTGGT-TTCTTGCTTTCCTCTT 457496 >seq2 Length=8082884 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || |||||||||||||| || | Sbjct 7139406 GACTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGACCATCCTCGAGTTGTTTCCCAGCG 7139465 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTT--A 138538 | || |||||||||||||| ||||| || || || ||||| ||| | || | ||| Sbjct 7139466 AAAATAAGACGCTGTTGGTCTGGAGGGATGCCCTCCTTGTC-CTGAATCTTGGCTTTGAC 7139524 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 |||| || | ||||| | ||||| ||||||| || | || || || |||| || | Sbjct 7139525 ATTG-TCGATTGTGTCTGATGACTCAACCTCGAGGGTTATGGTCTTTCCCGTCAAGGTCT 7139583 Query 138599 TTACAAAAATCTGCAT 138614 | || || |||||||| Sbjct 7139584 TCACGAAGATCTGCAT 7139599 >seq189 Length=529659 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| || | | || ||| | || | | | || |||||||| ||||| || ||| Sbjct 461301 CCGCCGCGAAGCCTCAGAACAAGGTGGAGGGTGGATTCCTTTTGGATGTTATAATCGGCA 461242 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||||||||||||||| || | | || || || || || || ||||| Sbjct 461241 AGGGTACGGCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGGCGTTGCTGATCAGGAGGG 461182 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 |||||||||||||| |||||| ||| | | || | || || | ||| || Sbjct 461181 ATACCTTCTTTGTCTTGGATTTTGGCTTTGACGTTGTCGATTGTATCAGAACTCTCGACT 461122 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | ||||| || ||||| ||||| || || ||||||||| Sbjct 461121 TCAAGAGTTATGGTTTTGCCTGTCAGGGTTTTCACGAAGATCTGCATG 461074 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496202755462800