Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq5129 461 2e-125 seq6568 114 3e-21 >seq5129 Length=4579 Score = 461 bits (510), Expect = 2e-125 Identities = 1005/1493 (67%), Gaps = 14/1493 (1%) Strand=Plus/Minus Query 3720 CCCGGCCCGATGATGTATGCGCTACCGGGCGAGGTGTCCATGAACAAATGGATTGCCCAG 3779 ||||| ||||| || ||||| |||||||||||||| |||||||| | || | | Sbjct 4372 CCCGGTCCGATCATCGTCGCGCTGCCGGGCGAGGTGTCGATGAACAAGTTCATCGACGGC 4313 Query 3780 AAGCTCAACCCCATGATCGAGGTCTGTGCAGCGGTCAAGAAGGCGCTGACCAGCACCGCC 3839 ||||||||| | ||||||| | | | | ||| || | ||| |||||| ||| Sbjct 4312 AAGCTCAACGCGCTGATCGACGACACGCCGGTGGTGCAGCGCGTGCTCACCAGCGTGGCC 4253 Query 3840 AGCCGCGACAGCGCCAACCAGCGCACGTTTAAGGACTTCGCCGGCGGCCAGCTGTTCGTG 3899 |||||||| | | |||| ||| |||| ||||||||| |||||| || || | | | Sbjct 4252 AGCCGCGAGTCCTCGAACCGGCGTTCGTTCAAGGACTTCCGCGGCGGGCAACTCTACATC 4193 Query 3900 GAGCACATGGGCAGCCCGCAGCGCCTGAAGTCCTCGACGGTGAAGTACCTGCAGGTGGAT 3959 |||||| ||||| |||| ||| |||||||| || ||| |||| | | | | || Sbjct 4192 GAGCACGCGGGCAACCCGACGCGGCTGAAGTCGACGCCGGCGAAGGTCATCCTCGCCGAC 4133 Query 3960 GAGATCGA-TGAGGCGCCGCAGCAGCTCTCCACTGGCGACGATCCGGTGAAGATGCTGGA 4018 ||| || | | ||| | ||| || | || ||||||||| | | || || Sbjct 4132 GAGTTCTCGTCATTCGCGTC-GCACCTGAAGAGCGGGGACGATCCGAACGCGCTCCTCGA 4074 Query 4019 CGGCCGTACATCGTCGTTCCCGACCACCTACAAGCGGCAGTACATCAGCACCCCTGGCAT 4078 |||||| | || |||| || ||| |||||| || | | | || |||| || | || Sbjct 4073 CGGCCGCAGCTCAGCGTTTCCATCCAGCTACAAACGCCTGAAGGTCGGCACGCCGGAGAT 4014 Query 4079 CGCCGGGCTCAGCCGGATTGCGAAGCTGTACGACAAGAGCGATCAGCGTCGGTATCACGT 4138 | ||| | | |||| || | |||||||||| ||| ||| ||||| || | |||| Sbjct 4013 CCTCGGCCGCTGCCGCATCACCGAGCTGTACGAGAAGTCCGACCAGCGCCGCTGGTACGT 3954 Query 4139 GCCGTGTCCCCACTGCGGCCACTTCCAGGCGCTGCAGTGGAGCGGCCTGGTGTGGGCGCC 4198 |||||| || ||||||||| |||| ||||| |||||||||||||| ||| || Sbjct 3953 GCCGTGCCCGGCGTGCGGCCACCGCCAGCCGCTGGAGTGGAGCGGCCTGCACTGGAACCC 3894 Query 4199 CGACAAGAGTCACGCATGGTATGCGTGCTGTGAGTGCGGCGTCGCGATCGAGGAGCACTT 4258 ||| | | ||| ||||| |||| | | |||| | | | ||||||||||| Sbjct 3893 CGAGGTCACGCGCGCCTGGTACTCGTGTCGCGCCTGCGAGGAAGTGTTCGAGGAGCACCA 3834 Query 4259 CAAGACAGAGATGATTGCGAAGGGGCGCTGGGTCGCCGCCAATCCTGAATCGCCCATCCG 4318 ||| | || | || || || ||||||| || | ||||| | || | ||||| Sbjct 3833 AAAGCCGCAGCTCATCGCCGCCGGCGGCTGGGTGGCGGAGAATCCCGGTGCGGCGATCCG 3774 Query 4319 CGGCTACACCATCAACTGCCTGTACTACCAGTTTGGCCTGGGTCC-ACGCTGGCTGGACC 4377 |||||| | |||| |||| ||||||| | | || || ||||| ||| ||||| |||| Sbjct 3773 TGGCTACCACGCCAACGGCCTCTACTACCCGGTGGGACTCGGTCCCACG-TGGCTCGACC 3715 Query 4378 TGGTAAAAGAGTGGCTGGAGGCGCAGGGCGATCCAGCTTCCCTCAAGACCTTCGTGAACG 4437 |||| |||||| || || |||||||| || || |||||||||||| | |||| Sbjct 3714 TGGTGCGGATGTGGCTCGACGCCCAGGGCGACCCGGCGAAGCTCAAGACCTTCATCAACG 3655 Query 4438 ACCGTCTGGCCGAGACGTGGGAAGACCCGGCAATGAGGGCGGTCAAGCACAACGTCATCA 4497 |||| || |||||| |||||||||||||||| ||| | ||||| ||||||||| | || Sbjct 3654 ACCGCCTCGCCGAGCCGTGGGAAGACCCGGCGATGCGCGCGGTGAAGCACAACCTGGTCG 3595 Query 4498 AGGATCGTGCCGAGCCCTATGCGCTTCGCTCGGCTCCGCAAGGTGTGCTGGCTATCACCG 4557 || || |||||||| | |||| ||| ||| ||||| | ||||| || |||||| Sbjct 3594 CCGACCGCGCCGAGCCGTGGCCGCTGCGCCCGGTGCCGCATTGGGTGCTCGCCGTCACCG 3535 Query 4558 TAGGTGTAGATACACAGGACAATCGCCTTGCTGTTCACGTCGTCGGCTGGGGGCGGGGTA 4617 || | ||||| |||||||| ||||| | || ||| || |||||||||| || || | Sbjct 3534 CCGGCATCGATACCCAGGACAACCGCCTGCCGGTGCACATCCTCGGCTGGGGCCGTGGCA 3475 Query 4618 TGACCGCCTGGACGCTGGACTATGTGGAACTGCAGGGCGATCCAGCCGAAGAAGCGGTGT 4677 ||||| |||| || | ||||| | ||||||| ||||||||| ||| || | |||| Sbjct 3474 TGACCTGCTGGCCGATCGACTACCTCGAACTGCCGGGCGATCCGAACGACGACGACGTGT 3415 Query 4678 GGGTAGCCCTGACCGATTTGCTCAATCGCGCAATCGAGCGCGAAGATGGCGCGCTGCTCC 4737 ||| || ||| || |||| | || | ||||| | || ||||| ||||| | Sbjct 3414 GGGCCGCGCTGGTGGACCTGCTGAGCCGGCCGATCGAACACGCGAGCGGCGCACTGCTGC 3355 Query 4738 GGCCGCTAGCTGTGGCCATCGACGCTGGT-GGCCACCGCACCGAGGCCGTCAAAAACTAC 4796 | | || ||| ||| || | ||||||||||| || || || || | | Sbjct 3354 GCGTGGAGGCCTCGGCGCAGGAC-ATGCTCGGCCACCGCACGGAAGCGGTGAAGGCGTTC 3296 Query 4797 GTCCGTCAGCGGCGCATCACCCGGCCAATGTGCATCTTTGGTGCTGTACCCAACAACGCT 4856 || || ||| || | ||||| || | | || || || |||||||||| Sbjct 3295 GTGCGCTCGCGCCGGCTGCGCCGGCACATCGCCGTGTTCGGCGCCACCGCCAACAACGCG 3236 Query 4857 CCTGTGCTGTCCAAGGGAAAGTTGGCTGACGTCACCTGGAAGGGCAAGACCGACAAGCGC 4916 || ||| |||| || || ||| |||| || || |||||||| | Sbjct 3235 CCGCCGCTCGGCAAGCCGCGCATGCAGGAGATCAACTGGCGCGGTCAGTACGACAAGCAC 3176 Query 4917 GGCAT-CACCATCAACCACGTGGGGACCGTTGCAGCCAAGCACTACCTCTACAGCCGTCT 4975 ||| | || | || || || || || || ||||||| |||||| || | || Sbjct 3175 GGCGTGCATGCGTATCC-GGTCGGCACGGTGGCGATCAAGCACATGCTCTACGGCTGGCT 3117 Query 4976 GTCGGCCGACGCCGAGCGCAAGCCCGAGAATCGTATGGTCCACCTCAGTGACCAGCTACC 5035 || ||||||| || |||||||||||| |||| | | | |||| |||||||| Sbjct 3116 CTCCTCCGACGCGGACCGCAAGCCCGAGGATCGACGCCTGCGCTTCAGCGACCAGCTCGG 3057 Query 5036 GGAGGAGTTCTTCCCGGGCTTGGTGTCGGAGGTCTACAACCCAGTCAAGAACCGCTTTGA 5095 | ||||| |||| ||| || ||| ||||||||| | |||||||||||| || Sbjct 3056 GCTGGAGTACTTCGGTGGCCTGACCAGCGAGACCTACAACCCGGCCAAGAACCGCTTCGA 2997 Query 5096 GAAGAA----GGTGACC--CGAAACGAGCCATTGGACACATGGGTATATGCCTACGCGGC 5149 |||||| || | || || ||||| || | ||||| ||||| || |||||||| || Sbjct 2996 GAAGAAGCGCGGCGGCCCGCGCAACGAACCGCTCGACACCTGGGTGTACGCCTACGCCGC 2937 Query 5150 GACCCATCACCCAGAGGTCCGTATCAACCGCTTCACGCGTTCCGATTGGGACC 5202 | | | || || ||| | || | |||||| ||| | |||||||||| Sbjct 2936 GGCGCTGCATCCGGAGCTGCGGCTGCACCGCTGGACGAAGGCGGATTGGGACC 2884 >seq6568 Length=2209 Score = 114 bits (126), Expect = 3e-21 Identities = 181/257 (70%), Gaps = 12/257 (5%) Strand=Plus/Plus Query 25307 CTTGATCCGCCCTACTGGGAAACCGAGGGCTATGGCGTTGAGTTCCCGTTTGCTGAGTAC 25366 || |||||||| |||||| ||||||| ||||| ||||| || || || || | |||||| Sbjct 444 CTGGATCCGCCGTACTGGCAAACCGAAGGCTACGGCGTGGAATTTCCCTTCGTCGAGTAC 503 Query 25367 GAGGCGATGGCCGAGCTGATGCGCACCTCGGCTGGCCGGTTCGTGGTCTCGATCAACGAC 25426 || || || || | |||||| | | ||| || || ||||||||||||| Sbjct 504 GAACGCATCGCGGAATTCATGCGCGTCGCCCAGGGCAAAGTCTTGCTCTCGATCAACGAT 563 Query 25427 CATCCTGAGATCCGCGAGGTCTTCGCCGGCTTCGACCTGGTGCCGCTTCAGTTGGACTAC 25486 || || || |||||| ||||||| |||||| | | | ||||| ||| | |||| Sbjct 564 CACCCCGACATCCGCCGCGTCTTCGAAGGCTTCACCGTAATCCCGCTGCAGATCCGCTAC 623 Query 25487 ACCATTGGC--GGAGGGCAGGGGAGAGGAAAGAAGTTCGGG-GAGCTGATCATTAAGAGC 25543 || || ||| ||||||| ||||| | |||| |||||| |||| |||||| Sbjct 624 ACGATCGGCCGGGAGGGC---CGAGAGCCA------GCGGGCGAGCTGCTCATCAAGAGC 674 Query 25544 TGGGACGACAGCCAGGC 25560 ||||||||| | ||||| Sbjct 675 TGGGACGACCGACAGGC 691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128782094222870