Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq189 131 2e-25 seq461 116 3e-21 seq78 109 5e-19 seq663 102 7e-17 seq185 84.2 2e-11 >seq189 Length=529659 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| ||||||| || || || || || |||||||||||||| ||||||||| Sbjct 461304 ATACCGCCGCGAAGCCTCAGAACAAGGTGGAGGGTGGATTCCTTTTGGATGTTATAATCG 461245 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | |||||| || ||| | |||| |||||||| || || Sbjct 461244 GCAAGGGTACGGCCGTCCTCGAGTTGTTTGCCAGCGAAAATCAGGCGTTGCTGATCAGGA 461185 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || |||||||| ||||| ||||| ||||| || | || | || || ||| ||| Sbjct 461184 GGGATACCTTCTTTGTCTTGGATTTTGGCTTTGA-CGTTGTCGATTGTATCAGAACTCTC 461126 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| | |||||||| || || ||||| || || || ||||| Sbjct 461125 GACTTCAAGAGTTATGGTTTTGCCTGTCAGGGTTTTCACGAAGATCTGCAT 461075 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| ||||| | || || || || || || |||||||||||||||||||| Sbjct 461532 ATGCCACCGCGAAGCCTGAGGACAAGGTGAAGGGTGGAATCCTTTTGGATATTATAATCC 461473 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || ||| || |||||||| || || | || | | || || ||||| Sbjct 461472 GCAAGGGTCCTACCATCCTCTAATTGTTTCCCAGCAAAAATTAGCCTCTGTTGATCCGGA 461413 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || |||||||| |||||||| || || | || | || | || |||||| ||| Sbjct 461412 GGGATACCTTCTTTGTCTTGAATCTTGGCCTTTA-CGTTGTCAATAGTATCGGAACTCTC 461354 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| ||||| | |||||||||||||| ||||| || || |||||||| Sbjct 461353 GACTTCAAGAGTTATGGTTTTGCCGGTTAGGGTTTTGACGAAGATTTGCAT 461303 Score = 86.0 bits (94), Expect = 6e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| ||||| || || || ||||| || ||||| ||||| | || | ||| || Sbjct 461968 CACGAGATGGAGAGTAGACTCCTTCTGAATATTGTAATCCGCAAGAGTCCTCCCATCCTC 461909 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||| || || || | || | | ||||||||||| ||||| ||||| ||||| || Sbjct 461908 TAATTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCCGGTGGAATACCTTCCTTATCCTG 461849 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || || ||| | || | |||| || || || ||| ||||| ||||| | || | Sbjct 461848 TATCTTGGCTTTCA-CGTTGTCTATCGTATCAGAGCTCTCAACTTCAAGAGTGATGGTCT 461790 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGC 45345 | || || ||||| || ||||| || |||||| ||| Sbjct 461789 TCCCTGTGAGAGTCTTGACAAAGATCTGCATCCCGC 461754 >seq461 Length=207379 Score = 116 bits (128), Expect = 3e-21 Identities = 168/232 (72%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATC- 45169 || ||||| |||||||| | ||| ||||| || || || ||||| || ||||||||||| Sbjct 160412 ATCCCTCCACGGAGCCTGAGCACAAGATGAAGGGTCGACTCCTTCTGAATATTATAATCA 160353 Query 45170 GCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGG 45229 ||| | || | ||| || | |||||| || ||| | ||||| ||||| || || || Sbjct 160352 GCT-AGAGTCCGACCATCCTCAAGTTGTTTCCCAGCGAAGATCAAACGTTGTTGATCTGG 160294 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288 || || ||||| || |||||||| ||||| | | || | || | ||||||| | Sbjct 160293 TGGGATCCCTTCCTTGTCTTGAAT-TTTTGCCTTAACGTTGTCGATGGTGTCGCTGCTTT 160235 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| |||||||||| || || ||||| | || || || || || ||||| Sbjct 160234 CGACCTCGAGAGTAATGGTCTTCCCGGTCAAGGTCTTGACGAATATCTGCAT 160183 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || |||||||| ||||| | ||| ||||| || ||||| |||||||| ||||||||||| Sbjct 160640 ATCCCTCCGCGCAGCCTTAGCACAAGATGAAGAGTTGACTCCTTTTGAATATTATAATCC 160581 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | || | ||| |||| || || || || | ||||||| |||||||| || Sbjct 160580 GCCAGAGTCCTGCCATCTTCCAGCTGCTTCCCAGCAAAGATCAATCTCTGCTGGTCTGGT 160521 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || ||||| ||| |||| || | || | ||||||| ||| Sbjct 160520 GGGATCCCCTCCTTGTCCTGAATCTTTGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTC 160462 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || || || || | || || |||||||| || || |||||||| |||||| Sbjct 160461 CACCTCTAGCGTGATAGTCTTTCCGGTTAGGGTCTTCACAAAAATCTGCATC 160410 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | || || || || || || || || || |||||||||||||| Sbjct 160865 CCACCGCGAAGGCGTAAGACAAGGTGAAGAGTAGACTCTTTCTGGATATTATAATCAGCC 160806 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| ||||| || || || || | |||| | |||||||||||| ||| Sbjct 160805 AAAGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAAATCAGCCTTTGCTGGTCCGGTGGA 160746 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 ||||| || || || ||||| || |||| || | |||||| | ||| || Sbjct 160745 ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTCACTACTCTCCACC 160686 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 || ||||||| || || || || | || || |||||||| |||||| Sbjct 160685 TCCAGAGTAATGGTCTTCCCCGTCAATGTCTTCACAAAAATCTGCATC 160638 >seq78 Length=1009284 Score = 109 bits (120), Expect = 5e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | |||||| ||||||||||| || ||||| || || | ||| | ||| || Sbjct 200678 CACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAGTCTGCAAGGGTGCGACCATCCTC 200737 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || |||||||| || | ||||| | |||||||||||| ||||| ||||| |||||||| Sbjct 200738 CAGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGTGGAATCCCTTCCTTATCTTG 200797 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 | | ||||| | | || | || | || || || ||| || || | || | |||| Sbjct 200798 GA-TCTTTGTCTTAACGTTATCAATAGTATCCGAGCTCTCCACCTCCAAGGTGATAGTTT 200856 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || ||||| |||||||| |||||| Sbjct 200857 TTCCAGTGAGGGTTTTCACAAAAATCTGCATC 200888 Score = 109 bits (120), Expect = 5e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | |||||| ||||||||||| || ||||| || || | ||| | ||| || Sbjct 220282 CACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAGTCTGCAAGGGTGCGACCATCCTC 220341 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || |||||||| || | ||||| | |||||||||||| ||||| ||||| |||||||| Sbjct 220342 CAGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGTGGAATCCCTTCCTTATCTTG 220401 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 || ||| ||||| || | || | || || || ||| || || | || | |||| Sbjct 220402 GATCTTTGTTTTGA-CGTTATCAATAGTATCCGAGCTCTCCACCTCCAAGGTGATAGTTT 220460 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 | || || || ||||| ||||| || |||||| Sbjct 220461 TTCCAGTGAGGGTTTTCACAAATATCTGCATC 220492 >seq663 Length=136023 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | ||| || || || || || || || || |||||||||||||| Sbjct 59741 CCACCACGGAGACGCAAGACAAGGTGAAGGGTAGACTCTTTCTGGATATTATAATCCGCC 59800 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | |||| | ||| ||||| || ||||| || | |||| || || || ||||| || Sbjct 59801 AAGGTTCTTCCATCCTCCAACTGCTTTCCGGCAAAGATCAGACGCTGTTGATCCGGTGGG 59860 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || |||||| |||| || | || | ||||||| ||| || Sbjct 59861 ATGCCCTCCTTGTCCTGGATTTTTGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCAC 59919 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||| ||| || ||||| | || || |||||||| ||||| Sbjct 59920 CTCCAGTGTAATCGTCTTCCCGGTCAAGGTCTTCACAAAAATCTGCAT 59967 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 45150 TCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTAT 45209 ||||| || |||||||||||| | || | ||| || | |||||||| ||| | Sbjct 60233 TCCTTCTGAATATTATAATCGGCCAAAGTCCGACCATCTTCGAGCTGTTTTCCGGCGAAG 60292 Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| ||||| || |||||||| ||||| || ||||||||||| || |||| || | Sbjct 60293 ATCAAACGTTGTTGATCCGGCGGGATGCCCTCCTTATCTTGAATCTTGGCCTTGA-CGTT 60351 Query 45270 -TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 || | ||||||| ||| || || || |||| || || || || | || || || Sbjct 60352 GTCGATGGTGTCGCTGCTCTCCACCTCTAGGGTAATGGTCTTCCCTGTCAAGGTCTTAAC 60411 Query 45329 AAAAATTTGCAT 45340 ||| || ||||| Sbjct 60412 AAATATCTGCAT 60423 >seq185 Length=543210 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || || || || ||||| |||||||| || || Sbjct 499357 CCACCACGGAGACGAAGGACAAGGTGAAGTGTGGACTCCTTCTGGATATTGTAGTCTGCC 499298 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| ||||| || ||||| || | ||||| | ||| ||||| || ||| Sbjct 499297 AGGGTGCGCCCATCTTCCAACTGCTTTCCAGCAAAGATCAACCTTTGTTGGTCTGGGGGA 499238 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || ||||| || || || || || || | || | || | |||||| || |||||| Sbjct 499237 ATACCTTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCAATGGTGTCTGAGCTCTCGAC 499179 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| | || || || || | ||| || |||||||||||||| Sbjct 499178 CTCCAGAGTGATGGTCTTTCCAGTCAAAGTCTTGACAAAAATTTGCAT 499131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451948874865400