Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq435 84.2 3e-11 seq439 82.4 9e-11 >seq435 Length=220439 Score = 84.2 bits (92), Expect = 3e-11 Identities = 176/260 (68%), Gaps = 3/260 (1%) Strand=Plus/Plus Query 127532 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCC 127591 || || || || || || ||||| | || ||||||||| ||| |||||||| || || Sbjct 104644 TGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGGCCTGGCATTAGCCCA 104703 Query 127592 CGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACAC 127651 || || || | ||| || ||||||||||| || ||||| || ||||| ||||| || Sbjct 104704 CGTTTTTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCCACGCAA 104763 Query 127652 GCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTCATCGCC 127711 || || || | || | ||| ||||| | | || | || | |||| | ||| Sbjct 104764 GCAAATGCGATTAACCTCTCCGCAAA-ACTCTCGCCTCCG--TCTATCCACCGTAAAGCC 104820 Query 127712 CACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTT 127771 |||| ||||| || | | ||| || || |||| || || | ||| || ||||| Sbjct 104821 CACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACAGACGGTTCTTC 104880 Query 127772 TCTGATGGATCTTTGATGTA 127791 || | | ||| |||||||| Sbjct 104881 TCAGTAGAATCCTTGATGTA 104900 >seq439 Length=218577 Score = 82.4 bits (90), Expect = 9e-11 Identities = 244/369 (66%), Gaps = 12/369 (3%) Strand=Plus/Minus Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763 |||||| || ||||| | | | ||| |||||| || || | ||| || || || Sbjct 171252 ATCAAACCGTCCTGGCCTCAACAAGGCAGAGTCAAGAATGTCTGCCCTGTTAGTTGCTGC 171193 Query 12764 GATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 12823 | ||||| |||||| || | || || |||||||| || |||| || || || | Sbjct 171192 AACGACAATGATGCCAGTATTACCCTCAAAACCATCCATTTCTGTCAGAAGCTGGTTAAG 171133 Query 12824 GGTTTGTTCACGTTCATCATT--CGCGGGCA-TACCACCCGCACTGCGTTGCTTACCGAC 12880 ||| ||||| | ||||||||| | | | || | ||| | || |||| | || || Sbjct 171132 GGTCTGTTCTCTTTCATCATTTCCTCCGCCAATTCCAGTTCCTCT---TTGCCTTCCCAC 171076 Query 12881 GGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTCA--AAG 12938 || |||||||| || | || || || || || || || ||| |||| ||| Sbjct 171075 AGCATCAATTTCATCCACAAATACAATGCAAGGAGCGTTCTCTTTGGC--CTTCTTGAAG 171018 Query 12939 ATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAA 12998 | ||| || |||| |||||| ||||| ||||||||||| ||||| | | | ||| Sbjct 171017 AGATCCCGGACTCGAGAGGCACCAACACCAACAAACATCTCAACAAACTCCGAACCTGAA 170958 Query 12999 CATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCC 13057 || | || || || || | |||||| || || || ||| || || |||||||| Sbjct 170957 -ATGGAGAAAAACGGAACACCCGCTTCACCAGCAATTGCCTTGGCCAGAAGAGTCTTCCC 170899 Query 13058 CGTCCCTGG 13066 || ||||| Sbjct 170898 AGTACCTGG 170890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613433464103400