Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq549 138 2e-27 >seq549 Length=172529 Score = 138 bits (152), Expect = 2e-27 Identities = 537/836 (64%), Gaps = 21/836 (3%) Strand=Plus/Minus Query 159650 TTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTC 159709 |||||||| || || ||||| || | || ||||| | ||||| | ||||||| || Sbjct 31111 TTCTCGAAGAAATTAGTCTTCCCTTGCAAAGATATCAACTCCATCCAATCGAATGGATTG 31052 Query 159710 TTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCG 159769 ||| | || |||| | || || || ||| || ||| || || || || || Sbjct 31051 GCCACATTGTACACCTTCCCGCACCCAAGCGCACCCAACATCCTATCAGCTACGAACTCA 30992 Query 159770 ATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGAC 159829 || || || ||| ||| | ||| ||||| | || | || ||||| ||| | Sbjct 30991 ATATACTGACTCATTAACTCCCCGTTCATCCCTACCAACGCGCATGGCAGCGCGTCCACC 30932 Query 159830 AGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCCC 159889 | ||||||| ||||||| || || || || |||| ||| || | || | | | Sbjct 30931 ACAAACTCCCTCTCAATATCCACAGCATCCTTCACTATCCCTCTCACTTGCTCCTCACTC 30872 Query 159890 GGCTTG---CCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 |||| | || | | || | || |||||||| || || || || || || Sbjct 30871 AGCTTCTTCCTCAGCAAGCTGT------AGAGCAGGCACGCGAAATCACAATGAAGCCCT 30818 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 || || || ||||| |||||||| || | | | || |||||||| | ||||||| ||| Sbjct 30817 TCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAGCCCCGGCATCAACCCACGCTTTTTT 30758 Query 160007 AGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCCGCAAACGC 160065 | |||||| || || ||||| | || | | ||||| ||||| |||||| ||||| || Sbjct 30757 AACCAAAATATCGCA-CAAAAACTCCCCGAGAAAAATATCCCTTCCACGCAAGCAAAAGC 30699 Query 160066 CACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGC 160125 || ||||| || | ||| || | |||| |||||| |||||| || Sbjct 30698 AACTAGCCTTTCCGCGAAACTCTCGCTCCCGTCAA---TCCACCGCAAGGCCCACCGTGC 30642 Query 160126 CTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCAC 160185 |||||| || | |||||||| |||| || | ||||| | | || ||||| Sbjct 30641 CTTCTTAGCCACGCACGGCACCGTTTCGATAGCATGAAACAGGCGATTCTTCTCCTCAGA 30582 Query 160186 ATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGC 160245 ||||||||| ||| | | ||| |||||| || | ||| | ||| || || || Sbjct 30581 ATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTCGGAGTGGATATTCTCAATCGC 30522 Query 160246 CATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATACT-GCACCTCCTGTGTGAACCTTT 160304 ||||| || ||| ||| ||||||| || ||| | ||||| | |||| | Sbjct 30521 GATCTGGAATCCGTAAAAAGCACGCGCCTCC-GAGACTTGGACCTCTTTCATGAAACGCC 30463 Query 160305 GACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGA 160364 | ||||| | || | ||| || | ||| || ||||| || | || ||||||| Sbjct 30462 CGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAAGAAGGCAAGGACATGAGAGA 30403 Query 160365 TGAAATGTCTCTCGTCTTTGTTGAGTC-TCTTTTCCCAGTGTGTCACGTCTTGGGCCAAA 160423 |||| || ||||||| ||||| ||||||||||| | || | | | Sbjct 30402 TGAAGTGCTTCTCGTC----GGGAGTCAGGTTTTCCCAGTGGCGGATATCCGACGAGAGA 30347 Query 160424 TCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCAGAT 160479 || ||||| || || ||||| || |||| ||| | |||||||| ||||||| Sbjct 30346 TCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTACATCTCCCAGAT 30291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795059632284400