Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq185 122 1e-22 seq41 116 4e-21 seq663 93.3 5e-14 seq78 93.3 5e-14 seq26 91.5 2e-13 seq137 86.0 7e-12 >seq185 Length=543210 Score = 122 bits (134), Expect = 1e-22 Identities = 167/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| || ||||| | ||||| || | || ||||| ||||| |||||||| | Sbjct 498675 TGCCTCCCCTCAAACGGAGCACCAAGTGGAGAGTGGATTCCTTCTGGATGTTGTAGTCAG 498616 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || || |||||||||||||| ||||||| | ||||||||| | | Sbjct 498615 CAAGGGTGCGACCATCCTCAAGCTGCTTGCCGGCAAATATCAGCCTCTGCTGGTCTGGGG 498556 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | || |||||||||| |||||| ||| | | | | ||||| ||| | Sbjct 498555 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCGATGGTGTCAGAACTC---T 498499 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| |||| ||||| || ||||| || || || ||||||||||| ||||| Sbjct 498498 CCACCTCCAAGGTGATTGTCTTGCCAGTAAGGGTCTTAACAAAGATCTGCAT 498447 Score = 100 bits (110), Expect = 3e-16 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| ||||| || || | ||||| ||| | ||| |||||| || || |||||||| | Sbjct 498447 TGCCACCTCTCAATCGGAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAG 498388 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || || || | || || || |||||||| || || || | | ||||||||| | | Sbjct 498387 CAAGGGTACGGCCATCCTCAAGTTGCTTGCCAGCAAAAATGAGCCTCTGCTGGTCTGGTG 498328 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | | |||||||||| |||||| ||| | | | | ||||| ||| || Sbjct 498327 GGATCCCCTCCTTGTCCTGGATCTTGGCCTTTACATTATCAATAGTGTCAGAGCT---TT 498271 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || | |||||||| ||||| || || || || || ||||||||||| Sbjct 498270 CCACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 498219 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| | || |||||| | || || | |||||| || || || Sbjct 499322 CTCCTTCTGGATATTGTAGTCTGCCAGGGTGCGCCCATCTTCCAACTGCTTTCCAGCAAA 499263 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | || ||||| | || | | ||||||||| |||||| ||| | ||| Sbjct 499262 GATCAACCTTTGTTGGTCTGGGGGAATACCTTCCTTGTCCTGGATCTTGGCCTTCA-CGT 499204 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| |||| || || |||| |||||||| || || |||| || | Sbjct 499203 TGTCAATGGTGTCTGAGCTC---TCGACCTCCAGAGTGATGGTCTTTCCAGTCAAAGTCT 499147 Query 46578 TAACAAAGATTTGCATT 46594 | ||||| ||||||||| Sbjct 499146 TGACAAAAATTTGCATT 499130 >seq41 Length=1573182 Score = 116 bits (128), Expect = 4e-21 Identities = 144/196 (73%), Gaps = 6/196 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| |||||||||||||| | ||| |||||| | || || | |||||| ||||| || Sbjct 839780 CTCCTTCTGGATATTGTAGTCTGCTAGGGTGCGCCCATCTTCCAACTGCTTTCCGGCAAA 839839 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||||| | || | | ||||||||| |||||| ||||| | Sbjct 839840 GATCAACCTTTGCTGGTCAGGGGGGATTCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 839899 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| ||| ||||| |||| |||||||| || || |||| || || Sbjct 839900 GTCAATGGTGTCTGAACTC---TCCACCTCCAGGGTGATGGTCTTTCCAGTCAAAGTCTT 839956 Query 46579 AACAAAGATTTGCATT 46594 |||||||||||||||| Sbjct 839957 AACAAAGATTTGCATT 839972 Score = 109 bits (120), Expect = 6e-19 Identities = 142/195 (73%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||| || | || ||||| | || || |||||||||||||| || Sbjct 840464 CTCCTTCTGGATGTTGTAATCAGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAA 840523 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | || ||||||||| |||||| ||||| | Sbjct 840524 GATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTGACATT 840583 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || || ||| ||||| |||| |||||||| || || || || || || Sbjct 840584 GTCGATGGTATCAGAACTC---TCCACCTCCAAGGTGATGGTCTTTCCAGTAAGGGTCTT 840640 Query 46579 AACAAAGATTTGCAT 46593 ||||||||||||||| Sbjct 840641 AACAAAGATTTGCAT 840655 Score = 105 bits (116), Expect = 8e-18 Identities = 141/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| || ||||| | || ||||| | || |||||||||||||| || || Sbjct 840236 CTCCTTCTGGATGTTATAGTCAGCAAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAA 840295 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | ||||||||| | || | || |||||||||| |||||| ||||| | Sbjct 840296 GATCAACCTCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGACATT 840355 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || || |||| || || |||| |||||||| || || || || || || Sbjct 840356 GTCGATGGTATCAGAGCTC---TCAACCTCCAAAGTGATGGTCTTTCCAGTGAGTGTCTT 840412 Query 46579 AACAAAGATTTGCAT 46593 |||||||| ||||| Sbjct 840413 CACAAAGATCTGCAT 840427 Score = 105 bits (116), Expect = 8e-18 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| ||||| | ||||| || | || |||||| ||||| ||||| || | Sbjct 840657 CCACCTCTCAAACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCAGCA 840716 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || || ||||||||||| || || |||| | ||||||||| | || Sbjct 840717 AGGGTGCGGCCATCCTCAAGCTGCTTGCCAGCAAAAATCAGCCTCTGCTGGTCTGGTGGG 840776 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | |||||||||| |||||| ||| | | | | ||||| ||| |||| Sbjct 840777 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTATCAATAGTGTCTGAGCT---TTCC 840833 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | |||||||| ||||| || || || || || ||||||||||| Sbjct 840834 ACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTCTTGACGAAGATTTGCAT 840883 >seq663 Length=136023 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||| || |||||||||||||| | ||||| || | || ||||||||||| || || || Sbjct 60004 CTCTTTCTGGATATTGTAGTCAGCCAGAGTCCGGCCATCTTCGAGCTGCTTTCCTGCAAA 60063 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || || || || | || | || ||||||||| ||||| ||||| ||| Sbjct 60064 GATCAAACGTTGTTGATCAGGTGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTGA-CGT 60122 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||||| || || || | || |||||||| || |||| || || | Sbjct 60123 TGTCGATGGTGTCGCTGCTCTCTACCTCTAGAGTAATGGTTTTCCCTGTCAAGGTCTTCA 60182 Query 46581 CAAAGATTTGCAT 46593 |||| || ||||| Sbjct 60183 CAAATATCTGCAT 60195 >seq78 Length=1009284 Score = 93.3 bits (102), Expect = 5e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || |||||||| ||||||||||||||||||||| | | ||||| | || || Sbjct 200451 ACAAGGTGCAATGTGGACTCCTTTTGGATATTGTAGTCTGCCAAGGTGCGTCCATCTTCC 200510 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||| || || || ||||| | ||||||||| | || | | ||||||||| | Sbjct 200511 AACTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCTTGG 200570 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||| | | | | || ||| |||||| || | || ||||| || Sbjct 200571 ATCTTTGTCTTCACGTTATCAATGGTATCGGAGCTTTCCACCTCAAGAGTAATGGTCTTT 200630 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| || || ||||| || ||||| Sbjct 200631 CCTGTCAAGGTCTTGACAAAAATCTGCAT 200659 Score = 91.5 bits (100), Expect = 2e-13 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || || |||||||| ||||||||||||||||||||| | || || || | || || Sbjct 220055 ACAAGGTGCAATGTGGACTCCTTTTGGATATTGTAGTCTGCCAGGGTACGTCCATCTTCC 220114 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 | |||||| || || || ||||| | ||||||||| | || | | ||||||||| | Sbjct 220115 AACTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCTTGG 220174 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTT 46561 ||||| |||| | | | | || || ||| |||||| || | || ||||| Sbjct 220175 ATCTTTGTCTTCACGTTATCAATGGTATCAGAGCT---TTCCACCTCAAGAGTAATGGTC 220231 Query 46562 TTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || |||| || || ||||| || ||||| Sbjct 220232 TTTCCTGTCAAGGTCTTGACAAAAATCTGCAT 220263 >seq26 Length=1968749 Score = 91.5 bits (100), Expect = 2e-13 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| |||| | ||| | |||| ||| | || |||||| ||||| || || || | Sbjct 78697 TGCCACCTCGAAGACGGAGAACCAAATGGAGGGTGGACTCCTTCTGGATGTTATAATCAG 78638 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 || ||||| | || ||||||||||| ||||| || || || | |||||||| | | Sbjct 78637 CAAGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAAGATTAACCTTTGCTGGTCCGGAG 78578 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATT 46541 | | | ||||||||| |||||| ||||| | | | ||||| |||| | Sbjct 78577 GGATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATTGTGTCTGAGCTC---T 78521 Query 46542 CCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || |||| ||||| || ||||| || || || |||||||| || ||||| Sbjct 78520 CAACTTCCAAGGTGATTGTCTTGCCAGTGAGGGTCTTAACAAAAATCTGCAT 78469 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||| || |||| || |||||| ||||||||||| || | | || | | || || Sbjct 79362 CACGAGGTGCAGAGTGGACTCCTTCTGGATATTGTAATCTGCCAAGGTCCTTCCATCTTC 79303 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||| ||||| || ||||| | ||||||||| | || | | |||||||||| Sbjct 79302 AAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGAGGAATCCCCTCCTTGTCCTG 79243 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGT 46560 ||| || ||||| | | | ||||| |||| || || |||| || ||||| Sbjct 79242 GATTTTGGCCTTGACATTGTCAATTGTGTCCGAGCTC---TCAACTTCCAAGGTTATGGT 79186 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || || |||||||| ||||| Sbjct 79185 CTTCCCAGTGAGGGTCTTCACAAAGATCTGCAT 79153 >seq137 Length=652956 Score = 86.0 bits (94), Expect = 7e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463 |||| ||||||||||| || | || || || | || || |||||||| || || || | Sbjct 513289 CCTTCTGGATATTGTAATCAGCAAGGGTACGGCCATCTTCCAGCTGCTTCCCAGCAAAGA 513230 Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523 ||| | |||||| || | || | | ||||||||| ||| || |||| | Sbjct 513229 TCAGTCTCTGCTGATCAGGAGGAATCCCTTCCTTGTCCTGGATTTTGGCTTTGACATTGT 513170 Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583 | | || || || ||||| || || | || ||||| ||||| ||||| ||||| |||| Sbjct 513169 CAATAGTATCACTAGATTCGACCTCAAGAGTTATGGTCTTGCCAGTCAGGGTTTTCACAA 513110 Query 46584 AGATTTGCAT 46593 |||| ||||| Sbjct 513109 AGATCTGCAT 513100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565170465409800