Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq189 120 2e-22 seq461 111 1e-19 seq78 100 2e-16 seq200 93.3 3e-14 seq663 91.5 1e-13 >seq189 Length=529659 Score = 120 bits (132), Expect = 2e-22 Identities = 167/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| ||||||| |||||||||||||| ||||| ||| || ||||| || ||||||| Sbjct 461761 CATC-CCGCCTCTCAAACGCAGTACCAGATGCAGAGTAGACTCCTTTTGAATGTTATAAT 461703 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | | | || ||||| || ||||| |||| || | | ||||||||||| Sbjct 461702 CCGCAAGAGTCCTCCCCTCTTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCG 461643 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 ||| | ||||| ||||| || || ||||| | | | ||| || | ||||| Sbjct 461642 GGGGAATCCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTATCAATTGTATCAGAGCTTT 461583 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 | || || | || ||||| || || |||||||| || |||||||| |||||| Sbjct 461582 CAACCTCAAGCGTGATTGTCTTTCCAGTTAAAGTCTTAACGAAGATTTGCATG 461530 >seq461 Length=207379 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || ||||| | ||| || || | ||| | ||||| || || || ||||| ||||||||| Sbjct 160181 CCTCCTCGGAGACGGAGGACAAGATGGAGGGTGCTCTCCTTCTGAATATTGTAATCGGCC 160122 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| || |||| |||| ||||| ||| | || |||| |||||| ||||||| || Sbjct 160121 AAAGTTCGGCCATCTTCCAGCTGTTTTCCGGCGAAGATTAGACGCTGTTGATCCGGTGGG 160062 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCAC 39671 | |||||| ||||| || || || | ||| | | | ||||| ||| ||||| Sbjct 160061 ATGCCTTCCTTGTCTTGAATCTTGGCCTTGA-CGTTGTCGATGGTGTCGCTGCTCTCCAC 160003 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| ||| || || || || || | ||||| |||||||||||||| Sbjct 160002 CTCCAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 159955 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || ||||||||||| || | | || |||| || | ||||||||| | || Sbjct 160373 TCCTTCTGAATATTATAATCAGCTAGAGTCCGACCATCCTCAAGTTGTTTCCCAGCGAAG 160314 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || ||||| || ||||| | || | ||||| ||||| |||||| |||| ||| Sbjct 160313 ATCAAACGTTGTTGATCTGGTGGGATCCCTTCCTTGTCTTGAATTTTTGCCTTAA-CGTT 160255 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||||| |||||| || || | |||||| || || || || || || || || Sbjct 160254 GTCGATGGTGTCGCTGCTTTCGACCTCGAGAGTAATGGTCTTCCCGGTCAAGGTCTTGAC 160195 Query 39708 GAAGATCTGCAT 39719 ||| |||||||| Sbjct 160194 GAATATCTGCAT 160183 >seq78 Length=1009284 Score = 100 bits (110), Expect = 2e-16 Identities = 162/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || |||| || || ||||| |||| ||| ||| || || |||||||| | Sbjct 220489 CATC-CCACCACGCAGTCGGAGCACCAAGTGCAGAGTTGATTCCTTCTGGATATTATAGT 220547 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | ||| | || || | ||||||||| |||| || | | ||||||||| | Sbjct 220548 CTGCAAGAGTGCGACCTTCCTCAAGTTGTTTCCCAGCAAAGATGAGCCTCTGCTGATCTG 220607 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | || || || || || ||| || | | | | || || | ||||| Sbjct 220608 GTGGAATTCCCTCCTTATCTTGGATCTTTGTCTTGACATTATCAATGGTATCCGAGCTTT 220667 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| |||||||||||||| || ||||| || ||||| || ||||||||||| Sbjct 220668 CCACCTCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTCACAAAGATCTGCAT 220719 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || |||| || || ||||| |||| ||| ||| || || |||||||| | Sbjct 200885 CATC-CCACCACGCAGTCGGAGCACCAAGTGCAGAGTTGATTCCTTCTGGATATTATAGT 200943 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | ||| | || || | ||||||||| |||| || | | ||||||||| | Sbjct 200944 CTGCAAGAGTGCGACCTTCCTCAAGTTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCTG 201003 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTT 39667 || | || || || || || ||| || | | | | || || | ||||| Sbjct 201004 GTGGAATTCCCTCCTTATCTTGGATCTTTGTCTTGACATTATCAATGGTATCCGAGCTTT 201063 Query 39668 CCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 |||| |||||||||||||| || || || || ||||| || ||||||||||| Sbjct 201064 CCACCTCCAAAGTAATTGTCTTTCCTGTCAAGGTTTTCACAAAGATCTGCAT 201115 Score = 89.7 bits (98), Expect = 4e-13 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || |||| ||| || |||||||||| ||| ||| || || |||||||| | Sbjct 220717 CATC-CCACCACGCAGACGAAGCACCAAATGCAGAGTAGATTCCTTCTGAATATTATAGT 220775 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | | |||| || | ||||| || ||||||| | | |||||||||| Sbjct 220776 CAGCAAGGGTCCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGATCCG 220835 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | ||||| ||||| | | | || || | | | | | | |||||| | |||| Sbjct 220836 GTGGGATCCCTTCCTTGTC-CTGAATCTTGGTCTTCACATTGTCAATTGTGTCAGAGCTT 220894 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || | ||||| || || || || | ||| || || ||||||||||| Sbjct 220895 TCCACCTCAAGGGTAATAGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 220947 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/233 (69%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || |||| ||| || |||||||||| ||| ||| || || |||||||| | Sbjct 201113 CATC-CCACCACGCAGACGAAGCACCAAATGCAGAGTAGATTCCTTCTGAATATTATAGT 201171 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 | || | | | |||| || | ||||| || |||| || | | |||||||||| Sbjct 201172 CAGCAAGGGTCCTTCCATCTTCAAGCTGTTTGCCAGCAAAGATAAGCCTTTGCTGATCCG 201231 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTT 39666 || | ||||| ||||| | | | || || | | | | | | |||||| | |||| Sbjct 201232 GTGGGATCCCTTCCTTGTC-CTGAATCTTGGTCTTCACATTGTCAATTGTGTCAGAGCTT 201290 Query 39667 TCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || | ||||| || || || || | ||| || || ||||||||||| Sbjct 201291 TCCACCTCAAGGGTAATAGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 201343 >seq200 Length=492930 Score = 93.3 bits (102), Expect = 3e-14 Identities = 171/249 (69%), Gaps = 4/249 (2%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || | ||| || || ||||| || | ||| ||| || || || || || || || Sbjct 457244 CCACCCCTCAAGCGAAGCACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAGTCTGCA 457303 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | ||| |||| || | |||||||||| | ||||| | ||| ||||| || | || Sbjct 457304 AGTGTACGTCCATCTTCTAGTTGTTTCCCGGCGAAAATAAGACGTTGCTGGTCTGGTGGG 457363 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | |||||| ||||| ||||| ||| | | |||| | ||| |||| ||| | Sbjct 457364 ATGCCTTCCTTGTCTTGGATTTTGGCTTTGACATTGTCGAT--TGTATCTGAAGATTCTA 457421 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATGTCGTGTGTTT 39730 | || | || || || || ||||| || ||||| ||||||||||||||||| | || || Sbjct 457422 CCTCGAGGGTTATGGTCTTCCCCGTCAAGGTTTTCACGAAGATCTGCATGTCTTCTGGTT 457481 Query 39731 CGTTGGTTT 39739 ||| ||| Sbjct 457482 TCTTGCTTT 457490 >seq663 Length=136023 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || ||||||||||| ||||| | | |||| ||||| || || ||| |||| Sbjct 59777 TCTTTCTGGATATTATAATCCGCCAAGGTTCTTCCATCCTCCAACTGCTTTCCGGCAAAG 59836 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | |||||| ||||||| || | ||| || ||||| |||||| || | ||| Sbjct 59837 ATCAGACGCTGTTGATCCGGTGGGATGCCCTCCTTGTCCTGGATTTTTGCCTTGA-CGTT 59895 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | ||||| ||| ||||| |||| ||||| || || || || || || || || Sbjct 59896 GTCGATGGTGTCGCTGCTCTCCACCTCCAGTGTAATCGTCTTCCCGGTCAAGGTCTTCAC 59955 Query 39708 GAAGATCTGCAT 39719 || |||||||| Sbjct 59956 AAAAATCTGCAT 59967 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 39523 GTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCG 39582 ||||| || || || ||||| |||||||||| | || |||| || | ||||| ||| Sbjct 60455 GTGCTCTCCTTCTGAATATTGTAATCGGCCAGAGTCCGACCATCTTCTAGCTGTTTTCCG 60514 Query 39583 CCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTA 39642 | || || ||||| || ||||||| || | ||| || ||||| || || ||| Sbjct 60515 GCGAAGATCAAACGTTGTTGATCCGGCGGGATGCCCTCCTTGTCTTGAATCTTGGCTTTG 60574 Query 39643 ATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGT 39701 | ||| | | | ||||| ||| ||||| || | || || || || || || | ||| Sbjct 60575 A-CGTTGTCGATGGTGTCGCTGCTCTCCACCTCAAGGGTTATAGTCTTGCCGGTCAGAGT 60633 Query 39702 TTTTACGAAGATCTGCAT 39719 ||| |||||||||||||| Sbjct 60634 TTTCACGAAGATCTGCAT 60651 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347328894253295