Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq439 152 6e-32 seq52 136 5e-27 seq99 82.4 9e-11 >seq439 Length=218577 Score = 152 bits (168), Expect = 6e-32 Identities = 288/419 (69%), Gaps = 6/419 (1%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAA 15977 ||||| || || | | || ||||| || | ||||| || || || | |||||| Sbjct 171221 TCAAGAATGTCTGCCCTGTTAGTTGCTGCAACGACAATGATGCCAGTATTACCCTCAAAA 171162 Query 15978 CCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 16037 |||||||| ||||||| ||||||||||| || ||||| | ||||||||| || | Sbjct 171161 CCATCCATTTCTGTCAGAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCCGCCA 171102 Query 16038 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGT 16097 |||| | | |||| ||||||| |||||||| ||||| | || || ||||| || Sbjct 171101 ATTCCAGTTCCTCTTTGCCTTCCCACAGCATCAATTTCATCCACAAATACAATGCAAGGA 171042 Query 16098 TGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAA 16155 || || || |||| ||||||||||| || || ||| || |||||||||| Sbjct 171041 GCGTTCTCTTTGGC--CTTCTTGAAGAGATCCCGGACTCGAGAGGCACCAACACCAACAA 170984 Query 16156 ACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCA 16214 ||||||| ||||| | | | ||| || | || || || ||| | |||||| ||| Sbjct 170983 ACATCTCAACAAACTCCGAACCTGAA-ATGGAGAAAAACGGAACACCCGCTTCACCAGCA 170925 Query 16215 ATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGT 16274 || || ||| ||||||||||| || |||||||| || | || || ||||| Sbjct 170924 ATTGCCTTGGCCAGAAGAGTCTTCCCAGTACCTGGAGGTCCAACAAGAAGAACACCTTTC 170865 Query 16275 GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 ||||| || || | || | |||||||||| | ||| ||||| ||||| | ||| Sbjct 170864 GGAATGCGAGCCCCTACTGCAGTGAATCTCTCAGGCTTCTTGAGAAACTCCACTACCTC 170806 >seq52 Length=1412070 Score = 136 bits (150), Expect = 5e-27 Identities = 276/404 (68%), Gaps = 12/404 (3%) Strand=Plus/Minus Query 15936 TTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAA 15995 || ||||| || || |||| || || || | || ||||||||||| ||||||| | Sbjct 1010446 TTAGTTGCCGCAATAACAATGATGCCAGTATTACCCTCGAAACCATCCATTTCTGTCAGA 1010387 Query 15996 AGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGT 16052 |||||||| | || || || | |||||| || || |||| || | | | | Sbjct 1010386 AGCTGGTTTAGTGTCTGCTCTCTTTCATCGTTTCCTCC---ACCAATTCCTGTTCCTCTT 1010330 Query 16053 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 16112 ||| ||||||| |||||||| ||||| | || || ||||| || ||| || || Sbjct 1010329 TGCCTTCCCACAGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGC- 1010271 Query 16113 ACTTCA--AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGT 16170 |||| ||||||||||| || || ||| || ||||||||||||||||| ||||| | Sbjct 1010270 -CTTCTTGAAGAGATCCCGGACTCGAGAGGCACCAACACCAACAAACATCTCAACAAACT 1010212 Query 16171 TTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGA 16229 | | ||| || | || || || ||| | |||||| ||||| || ||| ||| Sbjct 1010211 CCGAACCTGAA-ATGGAGAAAAACGGAACACCCGCTTCACCAGCAATTGCCTTGGCCAGA 1010153 Query 16230 AGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 ||||| || || |||||||| || | || || ||||| |||||| || || Sbjct 1010152 AGAGTTTTCCCAGTACCTGGAGGCCCAACAAGAAGAACACCTTTTGGAATGCGAGCCCCT 1010093 Query 16290 CTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 | || | |||||||||| | ||| ||||| ||||| | ||| Sbjct 1010092 ACTGCAGTGAATCTCTCAGGCTTCTTGAGAAACTCCACTACCTC 1010049 >seq99 Length=845567 Score = 82.4 bits (90), Expect = 9e-11 Identities = 179/260 (69%), Gaps = 16/260 (6%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTG--TTTCGTTATCA 15974 |||||| | |||| | |||||| || || | |||| || ||||| || | | | | Sbjct 697313 ATCAAGAACATCAGGTCTATTCGTAGCAGCCAATACAATAACACCTGAATTGCCTGA--A 697370 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| || ||||| | ||| |||||||| || || | || |||||| | | Sbjct 697371 AACCCATCCATTTCGGTCAACAACTGATTAATAGTCTGCTCTCTCTCGTCATTCCCA--C 697428 Query 16035 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | | | ||||| | | ||| | || || ||||||||||||||||| || || |||| Sbjct 697429 CTCCAAGTCCAGCCCCTCTCTGCCTCCCAACTGCATCAATCTCATCAATAAACACAATGC 697488 Query 16093 ATGGTTGATTTTCGCGAGC-GACTT---CAAAGAGATCCCGTACACGCTTGGCGCCCACA 16148 | ||| | ||| ||| | ||| | || | ||| | || | | || || || Sbjct 697489 AGGGT-GCTTT---CGACTTGGCTTTCTCGAACAAATCTCTCACTCTCGACGCTCCAACT 697544 Query 16149 CCAACAAACATCTCCACAAA 16168 |||||||||||||| ||||| Sbjct 697545 CCAACAAACATCTCAACAAA 697564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620667794522800