Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq435 105 8e-18 seq6087 87.8 2e-12 seq549 82.4 9e-11 >seq435 Length=220439 Score = 105 bits (116), Expect = 8e-18 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566 ||||||||||||||| || ||||| | ||| || |||| || || ||||| || || Sbjct 104643 ATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGGCCTGGCATTAGCCC 104702 Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 | ||| ||||||||||| || ||||||||||| || || || || || || ||||| || Sbjct 104703 ACGTTTTTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCCACGCA 104762 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAA 119654 || || |||| || | ||| |||||| Sbjct 104763 AGCAAATGCGATTAACCTCTCCGCAAAA 104790 >seq6087 Length=2767 Score = 87.8 bits (96), Expect = 2e-12 Identities = 324/502 (65%), Gaps = 18/502 (4%) Strand=Plus/Plus Query 11499 CTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGT 11558 || ||| |||||||| || || || || || || || |||| ||| |||||| || Sbjct 1513 CTGACGGTCGAAACGGCCGGGACGCAGCAGGGCCGGGTCCAGAACGTCGGGACGGTTGGT 1572 Query 11559 AGCGGCAATGACTACAATGCCAGTCTCATTG---TCGAAACCGTCCATTTCTGTGAGAAG 11615 ||||| || | | ||| |||| | || || |||||||| || || || Sbjct 1573 GGCGGCGATCAGGATGATGT---TCTCGGAGGCTTCAAAGCCGTCCATCTCGACCAGCAG 1629 Query 11616 CTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGG---CATACCACCTGCCGAACGCTT 11672 |||||| | |||||| || ||||| || ||| | || ||| | |||| || | Sbjct 1630 CTGGTTCAGCGTCTGCTCGCGCTCGTCATTGCCGCCGCCCAGACCGGC-GCCG--CGATG 1686 Query 11673 CTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTG 11732 |||||| ||||| || || |||||||| | ||| || || || ||||| Sbjct 1687 ACGACCGACGGCGTCGATTTCGTCGATGAAGATGATGCAGGGCGCATTCTTCTTGGCCTG 1746 Query 11733 TTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGC 11792 |||||| | || || || || | || || || || |||||||| || || |||| | Sbjct 1747 TTCGAACATGTCGCGCACGCGGCTGGCGCCGACGCCGACGAACATTTCGACAAAGTCCGA 1806 Query 11793 GGCAGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852 | || | | |||||| || | ||||| || | || || || || || || Sbjct 1807 ACCCGAGATCGAGAAGAAGGGCACGCCCGCTTCACCCGCAACCGCGCGCGCCAGCAGCGT 1866 Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC---ACT 11909 ||| || || || || | || | || |||||||| |||||||||| | || || Sbjct 1867 CTTGCCGGTGCCGGGAGGGCCGACCAGCAGGGCGCCCTTGGGGATCTTGCCGCCCAGACG 1926 Query 11910 TCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || | || | || | ||| |||||||| || | ||||| ||||| |||||||| Sbjct 1927 CTGGAACTTGC---CCGGGTCCTTCAGGAAGTCGACGACCTCCTGCAGTTCGTCCTTGGC 1983 Query 11970 GGAGTCGATACCCTCAACATCG 11991 ||| | ||| | |||||| Sbjct 1984 TTCGTCCACGCCCGCGACATCG 2005 >seq549 Length=172529 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566 ||||||||||||||| || ||||| | ||| || ||| || || ||||| | || Sbjct 30827 ATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAGCCCCGGCATCAACCC 30768 Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 | || |||| |||||| || ||||||||||| || || || || || || ||||| || Sbjct 30767 ACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCCACGCA 30708 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAA 119654 || ||||| | ||| | || || ||| Sbjct 30707 AGCAAAAGCAACTAGCCTTTCCGCGAAA 30680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588905212447000