Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq439 145 9e-30 seq52 129 7e-25 seq99 86.0 7e-12 >seq439 Length=218577 Score = 145 bits (160), Expect = 9e-30 Identities = 284/417 (68%), Gaps = 2/417 (0%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | || || || || | ||||| || || || | | |||||| Sbjct 171221 TCAAGAATGTCTGCCCTGTTAGTTGCTGCAACGACAATGATGCCAGTATTACCCTCAAAA 171162 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 |||||||| ||||||| ||| ||||||| || ||||| | ||||||||| || | Sbjct 171161 CCATCCATTTCTGTCAGAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCTCCGCCA 171102 Query 9345 CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGT 9404 |||| | | |||| ||||||| |||||||| ||||| | || ||||| || || Sbjct 171101 ATTCCAGTTCCTCTTTGCCTTCCCACAGCATCAATTTCATCCACAAATACAATGCAAGGA 171042 Query 9405 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAAC 9464 || || ||| | | |||||||| || || | ||| || |||||||||||| Sbjct 171041 GCGTTCTCTTTGGCCTTCTTGAAGAGATCCCGGACTCGAGAGGCACCAACACCAACAAAC 170982 Query 9465 ATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT 9523 ||||| ||||| | | | ||| || | || || || ||| | |||||| ||||| Sbjct 170981 ATCTCAACAAACTCCGAACCTGAA-ATGGAGAAAAACGGAACACCCGCTTCACCAGCAAT 170923 Query 9524 GGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGG 9583 || ||| ||||||||||| || |||||||| || | || || |||| || Sbjct 170922 TGCCTTGGCCAGAAGAGTCTTCCCAGTACCTGGAGGTCCAACAAGAAGAACACCTTTCGG 170863 Query 9584 AATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 ||| || || | || | |||||||||| | ||||||||| ||||| | ||| Sbjct 170862 AATGCGAGCCCCTACTGCAGTGAATCTCTCAGGCTTCTTGAGAAACTCCACTACCTC 170806 >seq52 Length=1412070 Score = 129 bits (142), Expect = 7e-25 Identities = 272/402 (68%), Gaps = 8/402 (2%) Strand=Plus/Minus Query 9243 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9302 || || || || || |||| || || || | | || ||||||||||| ||||||| | Sbjct 1010446 TTAGTTGCCGCAATAACAATGATGCCAGTATTACCCTCGAAACCATCCATTTCTGTCAGA 1010387 Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGT 9359 || ||||| | || || || | |||||| || || |||| || | | | | Sbjct 1010386 AGCTGGTTTAGTGTCTGCTCTCTTTCATCGTTTCCTCC---ACCAATTCCTGTTCCTCTT 1010330 Query 9360 TGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCG 9419 ||| ||||||| |||||||| ||||| | || ||||| || || ||| || ||| Sbjct 1010329 TGCCTTCCCACAGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 1010270 Query 9420 ATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 9479 | | |||||||| || || | ||| || ||||||||||||||||| ||||| | Sbjct 1010269 TTCTTGAAGAGATCCCGGACTCGAGAGGCACCAACACCAACAAACATCTCAACAAACTCC 1010210 Query 9480 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 9538 | | ||| || | || || || ||| | |||||| ||||| || ||| ||||| Sbjct 1010209 GAACCTGAA-ATGGAGAAAAACGGAACACCCGCTTCACCAGCAATTGCCTTGGCCAGAAG 1010151 Query 9539 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACT 9598 ||| || || |||||||| || | || || |||| |||||| || || Sbjct 1010150 AGTTTTCCCAGTACCTGGAGGCCCAACAAGAAGAACACCTTTTGGAATGCGAGCCCCTAC 1010091 Query 9599 TCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 | || | |||||||||| | ||||||||| ||||| | ||| Sbjct 1010090 TGCAGTGAATCTCTCAGGCTTCTTGAGAAACTCCACTACCTC 1010049 >seq99 Length=845567 Score = 86.0 bits (94), Expect = 7e-12 Identities = 177/257 (69%), Gaps = 10/257 (4%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTG--TTTCATTATCA 9281 |||||| | |||| | |||||| || || | |||| || ||||| || | | | | Sbjct 697313 ATCAAGAACATCAGGTCTATTCGTAGCAGCCAATACAATAACACCTGAATTGCCTGA--A 697370 Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 || |||||||| || ||||| | || |||||||| || || | || |||||| | | Sbjct 697371 AACCCATCCATTTCGGTCAACAACTGATTAATAGTCTGCTCTCTCTCGTCATTCCCA--C 697428 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | ||||| | | ||| | || || ||||||||||||||||| || ||||| | Sbjct 697429 CTCCAAGTCCAGCCCCTCTCTGCCTCCCAACTGCATCAATCTCATCAATAAACACAATGC 697488 Query 9400 ATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 | || || ||| | ||| | || || | ||| | || || || || || ||| Sbjct 697489 A-GGGTGCTTTCGACTTGGCTTTCTCGAACAAATCTCTCACTCTCGACGCTCCAACTCCA 697547 Query 9459 ACAAACATCTCCACAAA 9475 ||||||||||| ||||| Sbjct 697548 ACAAACATCTCAACAAA 697564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589909891682600