Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_015263.1 Length=114768 Score E Sequences producing significant alignments: (Bits) Value seq6334 246 2e-60 seq2164 232 5e-56 >seq6334 Length=2458 Score = 246 bits (272), Expect = 2e-60 Identities = 219/280 (78%), Gaps = 43/280 (15%) Strand=Plus/Plus Query 45450 TGGTATATAATAACAGGATATGGTGTTAATGGTAGCATGCGTGTTTTGGGAACATGTAGT 45509 ||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 2115 TGGCATATAGTAACAGGATATAGTGTTAATGGTAGCATGCGTGTTTTGGGAACATGTAGT 2174 Query 45510 GCTGGTTCGAGTCCAGCTATCCTGATGAGTGGTGTATAGTCC----ACGAAGTGCTAAGC 45565 | |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| Sbjct 2175 GTTGGTTCGAGTCCAGCTATCCTGATGAGTGGTGTATAGTCCATAGACGAAGTGTTAAGC 2234 Query 45566 TATTGCGCAGTACCTTGGCTCAACTATACAAGAACCATATTGAACATAACTGGTGCATGG 45625 || |||| ||||||||| | |||||||||||| || Sbjct 2235 TA-------------TGGCACAACTATAC--------------AGATAACTGGTGCACGG 2267 Query 45626 TTATTAGGATATGGGGTTAGTTAACGGAAGACCTAGTGTATTAAAGTGTCACAGGCTTAA 45685 |||| | || ||||| ||| ||||||||||||||||||||||||| ||| Sbjct 2268 TTAT-----------ATCAGCTAACGAAAGTCCTAGTGTATTAAAGTGTCACAGGCATAA 2316 Query 45686 TTAAGTGACAGCTGATTAGAGTAA-CAGGTGTGCTAACGT 45724 ||||||||||||| ||||||||| |||||| ||||||| Sbjct 2317 CTAAGTGACAGCTGGTTAGAGTAATAAGGTGTACTAACGT 2356 Score = 159 bits (176), Expect = 3e-34 Identities = 170/220 (77%), Gaps = 26/220 (12%) Strand=Plus/Plus Query 46718 AAAGACTAAGGTGTACCGATTGACGGTACTTAAATGTCATAGAGTTGACAGCCAAGCAGA 46777 ||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||| | Sbjct 1862 AAAGAATA-GGTGTACTGATTGACGGTACTTAAATGTCATAGAGTTGACAGCCAAGCATA 1920 Query 46778 GGGTGCATAGCATAGAAGCGAATCTAGGGAGCTATAAGTTAAATGA-TAC-AGCCAAACA 46835 ||||||| | || |||| | || | | | |||||||| ||| ||| Sbjct 1921 GGGTGCAAACTGTA-AAGCATA-CTG------TTTGA-TTAAATGAGTACTAGC------ 1965 Query 46836 GAAACCGAAACTAACAGCTCTTTGCATAGTGCGAACATAGTATAGTGGTAATGCTACAGA 46895 |||||||||| ||||| || |||||||||||||| ||||||||||||||| Sbjct 1966 --------AACTAACAGCCCTTTGTATCTAGCGAACATAGTATAATGGTAATGCTACAGA 2017 Query 46896 CTCTAAGTATGTAAACGTAGGTTCGATTCCTACTGTTCGT 46935 || || ||||||||| ||||||||||||||||||||| Sbjct 2018 TTCCAAACCTGTAAACGTGGGTTCGATTCCTACTGTTCGT 2057 >seq2164 Length=27727 Score = 232 bits (256), Expect = 5e-56 Identities = 373/528 (71%), Gaps = 45/528 (9%) Strand=Plus/Plus Query 21855 AGTAGTATTGAATTAAAAAATGAAAGTTTATGCTTGACAAAATGAAAATTA--TTTAGCA 21912 ||||| | | ||| ||||||| | | || ||||||| || ||||| ||| | | Sbjct 2152 AGTAGAAATAAATAAAAAAATATCATCTAATATTTGACAAC--GATAATTAATTTTGGTA 2209 Query 21913 TAATAGTATATATAGAAATAAAGGAGAACATAAATAATGGTA---AAATTAACACAAAAA 21969 ||||||||||||||||||||||||||||| ||| ||||||| |||||||| |||||| Sbjct 2210 TAATAGTATATATAGAAATAAAGGAGAAC-TAACAAATGGTAGTCAAATTAACGCAAAAA 2268 Query 21970 CAAGCCGATTATCTTAAAAGTTTTAGAAA---------TGA------CAAAAAATTAGCT 22014 ||||| ||||||||| ||| |||| |||| ||| ||||||| ||| Sbjct 2269 CAAGCTGATTATCTTGAAACTTTTGGAAACCTTGAAGATGAAATAAACAAAAAACGAGCG 2328 Query 22015 TTCTATCATATTGGTAGGTGGGGTTTTGGTTATAATCTTAAAGACGGTAACGAAAAAGTT 22074 | | ||| || | | | |||| ||| || ||| | || ||| ||| ||| | Sbjct 2329 CTTTGTCACATCACTCGTTTTGGTTATGGATACAATTGGATAGGCGG---CGATAAATGT 2385 Query 22075 TACGCAACTAATGAAGAAGCACCGTTCACT--TACGATGaaaaagaaaaaaTGTTAGATG 22132 ||| || || | || | | ||||| | || ||||| || | || | Sbjct 2386 C---CAAGTAGTG--------CTTTTGAGTGTTACGA-GCAATTGAAAA--TGGTTGAAG 2431 Query 22133 CTGTTATTAATGGTTATGAAGTTGTCGTACCTACATTTAAGTTTTTTAACTATTTTACAA 22192 |||| ||||| |||||||||||| | | ||||| ||||||||||| ||||| || | | Sbjct 2432 CTGTCATTAACGGTTATGAAGTTATTGAACCTAAATTTAAGTTTTATAACTTTTCTGATA 2491 Query 22193 AAAGTC-ATTACC--CTTTATATTATGCTGGAAATTTGAACCAATTAACGGACAGTGAAG 22249 || | | | | ||||||||||||||| | | || |||||||| | || Sbjct 2492 GTAGCGGAGGAACTGCATTATATTATGCTGGACAGTCTAAACAATTAACAAAATTCGAGC 2551 Query 22250 AAGAAGCTCTTAAAGTTAAAAAAGATAGCGAAGAATATAAAGCCTTGGAACTTTTAGGTT 22309 |||| |||||| |||||||| | | ||||| ||||||||||| ||| | |||||||| Sbjct 2552 AAGATGCTCTTGAAGTTAAAGAGGGGAGCGAGGAATATAAAGCTTTGTTAGCTTTAGGTT 2611 Query 22310 TCCTTAAAGAAAAGGTATGATAACATCTTTTGAATCACTAGCTGAAAG 22357 || || ||||| | |||||||||||||||||||||||||||||||||| Sbjct 2612 TCGTTGAAGAAGAAGTATGATAACATCTTTTGAATCACTAGCTGAAAG 2659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 367089778345935