Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq9615 486 3e-132 seq223 486 3e-132 seq218 201 2e-46 seq421 187 4e-42 >seq9615 Length=156766 Score = 486 bits (538), Expect = 3e-132 Identities = 688/967 (71%), Gaps = 0/967 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || ||| | || |||| ||||||||||| | ||||||||| | | | Sbjct 1310 ACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACC 1251 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| ||||| ||||| || || || || || || Sbjct 1250 GCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATT 1191 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | ||||| ||||| ||||| |||||||| || | Sbjct 1190 CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATT 1131 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || ||||| ||||| || |||||||| ||| | ||||| Sbjct 1130 CCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGAT 1071 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||| || || |||| | || || | | |||||| | ||||| | Sbjct 1070 GAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 1011 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | |||||||||| || | | | |||||| | |||||||| Sbjct 1010 GCTTGTTACATGGGGCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATT 951 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | || || ||| || ||| | | |||||| || Sbjct 950 GCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATC 891 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||| || |||| ||||| || ||||||||||| || || |||| ||| Sbjct 890 GGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATG 831 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || ||| Sbjct 830 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCT 771 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | ||| ||| ||||| ||||| | || || ||| | | Sbjct 770 GGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTG 711 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | |||||| || | ||||||| || || |||||||| Sbjct 710 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAA 651 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || |||||||| || || ||||| ||||| || | ||||||||||| || Sbjct 650 GAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 591 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 ||| |||||||| | | | || |||||| | || || | ||||| | ||||| Sbjct 590 AGTTTTAACAACTCTCGCTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATC 531 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| | |||||||| ||||| || || |||||||| |||||| Sbjct 530 TGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAAC 471 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || ||||| || || ||| || ||| ||| ||||| || || ||||| | Sbjct 470 CAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGT 411 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||| ||||| || ||||| ||||| || ||||| ||||| | Sbjct 410 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTA 351 Query 216275 GCTGCTG 216281 ||||||| Sbjct 350 GCTGCTG 344 >seq223 Length=428319 Score = 486 bits (538), Expect = 3e-132 Identities = 688/967 (71%), Gaps = 0/967 (0%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 ||||| || ||| | || |||| ||||||||||| | ||||||||| | | | Sbjct 58756 ACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACC 58815 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| ||||| ||||| || || || || || || Sbjct 58816 GCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATT 58875 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | ||||| ||||| ||||| |||||||| || | Sbjct 58876 CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATT 58935 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || ||||| ||||| || |||||||| ||| | ||||| Sbjct 58936 CCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGAT 58995 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||| || || |||| | || || | | |||||| | ||||| | Sbjct 58996 GAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 59055 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | |||||||||| || | | | |||||| | |||||||| Sbjct 59056 GCTTGTTACATGGGGCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATT 59115 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | || || ||| || ||| | | |||||| || Sbjct 59116 GCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATC 59175 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||| || |||| ||||| || ||||||||||| || || |||| ||| Sbjct 59176 GGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTACTTTTAACTTTATG 59235 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||||||||||||||| || ||||||||||| ||||||||||| || ||| Sbjct 59236 ATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCT 59295 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | ||| ||| ||||| ||||| | || || ||| | | Sbjct 59296 GGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGGTAACCTCTAGTTTG 59355 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | |||||| || | ||||||| || || |||||||| Sbjct 59356 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAA 59415 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || |||||||| || || ||||| ||||| || | ||||||||||| || Sbjct 59416 GAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 59475 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 ||| |||||||| | | | || |||||| | || || | ||||| | ||||| Sbjct 59476 AGTTTTAACAACTCTCGCTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATC 59535 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| | |||||||| ||||| || || |||||||| |||||| Sbjct 59536 TGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATGGTTTCAATTTCAAC 59595 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || ||||| || || ||| || ||| ||| ||||| || || ||||| | Sbjct 59596 CAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGT 59655 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||| ||||| || ||||| ||||| || ||||| ||||| | Sbjct 59656 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCTCTAGACCTA 59715 Query 216275 GCTGCTG 216281 ||||||| Sbjct 59716 GCTGCTG 59722 >seq218 Length=447883 Score = 201 bits (222), Expect = 2e-46 Identities = 361/527 (69%), Gaps = 18/527 (3%) Strand=Plus/Minus Query 215331 ACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCA 215390 || |||| ||||||||||| | ||||||||| | | | || || || || | Sbjct 92967 ACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTCTGTATTTA 92908 Query 215391 TCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTG 215450 | | || ||||| ||||| ||||| || || || || || || | || || || ||| Sbjct 92907 TTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTCTTTCTG 92848 Query 215451 GTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAA 215510 | | | ||| ||||| ||||| ||||| |||||||| || | |||| ||| || | Sbjct 92847 GAT--TAAATTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTA 92790 Query 215511 TCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATG 215570 | || || ||||| ||||| || |||||||| ||| | ||||| |||||| | ||||| | Sbjct 92789 TAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACG 92730 Query 215571 GTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAA 215630 | || |||| | || || | | |||||| | ||||| | || ||| || Sbjct 92729 GCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGC 92670 Query 215631 GACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCG 215690 | |||||||||| || | | | |||||| | |||||||| |||||| || || | Sbjct 92669 GTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAG 92610 Query 215691 CACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCT 215750 | ||||| | || || ||| || ||| | | |||||| ||||||| || ||| | Sbjct 92609 CTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTT 92550 Query 215751 CTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTG 215810 | |||| | ||| | |||| || || |||| ||| || |||||||| Sbjct 92549 CGGATGGT---CCAGT--------CTGGTACTTTGAACTTTATGATT-----CCAGGCTG 92506 Query 215811 AGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGT 215857 |||||||||| || ||||||||||| ||||| ||||| || |||||| Sbjct 92505 AGCACAACATCCTTATGCACCCATTTCACATCTTAGGCGTAGCTGGT 92459 Score = 201 bits (222), Expect = 2e-46 Identities = 361/527 (69%), Gaps = 18/527 (3%) Strand=Plus/Minus Query 215331 ACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCA 215390 || |||| ||||||||||| | ||||||||| | | | || || || || | Sbjct 367030 ACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTCTGTATTTA 366971 Query 215391 TCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTG 215450 | | || ||||| ||||| ||||| || || || || || || | || || || ||| Sbjct 366970 TTATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTCTTTCTG 366911 Query 215451 GTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAA 215510 | | | ||| ||||| ||||| ||||| |||||||| || | |||| ||| || | Sbjct 366910 GAT--TAAATTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTA 366853 Query 215511 TCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATG 215570 | || || ||||| ||||| || |||||||| ||| | ||||| |||||| | ||||| | Sbjct 366852 TAGGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACG 366793 Query 215571 GTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAA 215630 | || |||| | || || | | |||||| | ||||| | || ||| || Sbjct 366792 GCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGC 366733 Query 215631 GACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCG 215690 | |||||||||| || | | | |||||| | |||||||| |||||| || || | Sbjct 366732 GTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAG 366673 Query 215691 CACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCT 215750 | ||||| | || || ||| || ||| | | |||||| ||||||| || ||| | Sbjct 366672 CTCCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTT 366613 Query 215751 CTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTG 215810 | |||| | ||| | |||| || || |||| ||| || |||||||| Sbjct 366612 CGGATGGT---CCAGT--------CTGGTACTTTGAACTTTATGATT-----CCAGGCTG 366569 Query 215811 AGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGT 215857 |||||||||| || ||||||||||| ||||| ||||| || |||||| Sbjct 366568 AGCACAACATCCTTATGCACCCATTTCACATCTTAGGCGTAGCTGGT 366522 >seq421 Length=230418 Score = 187 bits (206), Expect = 4e-42 Identities = 310/448 (69%), Gaps = 0/448 (0%) Strand=Plus/Minus Query 215834 TTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGT 215893 || ||||||||||| ||||||||||| ||||| || | | || || ||||| ||| Sbjct 19671 TTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTTCCTATTTAATGTTATGCATGGT 19612 Query 215894 TCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGT 215953 || | || || ||| | | ||||| || || || || | |||||| || | ||| Sbjct 19611 TCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 19552 Query 215954 TACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGT 216013 |||| || || |||||||| |||| || || ||| |||| | || ||||| |||||| Sbjct 19551 TACAGATTTGGTCAAGAGGAAAAAACTTATAATATCATAGCCACTCATGGTTATTTTGGT 19492 Query 216014 CGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCA 216073 | | ||||||||||| || ||| |||||||| | | | || |||||| | || Sbjct 19491 CAATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGCTCTTTACATTTCTTCTTAGCT 19432 Query 216074 GCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAAC 216133 || | ||||| | |||||| | | ||| | ||| | ||||| || ||||| Sbjct 19431 GCTTGGCCTGTAGTAGGTATCTAGTTCATTGCTTTAGGTATTAGCACTATAGCTTTCAAT 19372 Query 216134 CTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACT 216193 || || |||||| | |||||||| | ||| || || ||| || ||| ||| Sbjct 19371 CTAAATGGTTTCGATTTCAACCAATTTGTAGTTGATAGTCAAGGTTGTGTAATTAATACC 19312 Query 216194 TGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCT 216253 ||||| || || ||||| | || |||||||||||| | ||||| || ||||| ||| Sbjct 19311 TGGGCTGATATTATTAACTGTGCTAACCTTGGTATGGAAATTATGCATGAACGTAATGCT 19252 Query 216254 CACAACTTCCCATTAGACTTGGCTGCTG 216281 || || ||||| ||||| | ||||||| Sbjct 19251 CATAATTTCCCTCTAGACCTAGCTGCTG 19224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744992050505200