Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq9615 547 8e-151 seq223 547 8e-151 seq218 226 3e-54 seq421 190 2e-43 >seq9615 Length=156766 Score = 547 bits (606), Expect = 8e-151 Identities = 704/971 (73%), Gaps = 0/971 (0%) Strand=Plus/Minus Query 169697 ATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCC 169756 ||||| |||| ||||| | ||||| | ||| |||| ||||| ||||| |||||||| | Sbjct 1324 ATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTC 1265 Query 169757 CATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGG 169816 | | |||| | ||| | | ||||| | |||||||| || || || || || | Sbjct 1264 CTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAG 1205 Query 169817 ACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCT 169876 |||| ||||| || | |||||||| | || || | | ||||| ||||| ||||| | Sbjct 1204 ACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTT 1145 Query 169877 CTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAG 169936 ||||||| || |||| |||| || || || | ||||| || || || ||||||| Sbjct 1144 CTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAG 1085 Query 169937 CAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACT 169996 | ||| | | ||||| ||||| || ||||| ||||||||| | || || | | |||| Sbjct 1084 CGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACT 1025 Query 169997 TCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTA 170056 || | | || | || |||||||| | |||||||||| | |||| | |||| Sbjct 1024 TCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTGAGTTTCCGTCTGGGTA 965 Query 170057 TGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCT 170116 ||||||||||||| ||| |||||||| ||||| || | || || ||||| |||| Sbjct 964 TGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCT 905 Query 170117 TAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTA 170176 | | ||||| ||||||| ||| ||| || || || ||||||||||| ||||| |||| Sbjct 904 TGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTA 845 Query 170177 CATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATA 170236 | |||||||| ||| | |||||||| || ||||||||||| |||||||||||||| || | Sbjct 844 CTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACA 785 Query 170237 TGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTG 170296 || ||| || |||||| | ||||| || | || ||| || ||||| ||||| | | Sbjct 784 TGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGG 725 Query 170297 TAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAAT 170356 |||| ||| | | ||||| || || ||||| || || || || | || |||| || Sbjct 724 TAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGAT 665 Query 170357 TCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTA 170416 | || ||||| |||||||| || || || || || || ||||| || ||||| || | | Sbjct 664 TTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGA 605 Query 170417 TCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCC 170476 |||||||||||||||| |||||||| ||| | | || |||||| | ||| | | | Sbjct 604 TCTTCCAATATGCTAGTTTTAACAACTCTCGCTCTTTACATTTCTTCTTAGCTGCTTGGC 545 Query 170477 CTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATG 170536 |||||||| | |||||||| ||| | | |||||| |||| ||||| || || || |||| Sbjct 544 CTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATG 485 Query 170537 GATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAG 170596 | || || |||||||| || | || ||| | ||| ||| || ||| ||||| | Sbjct 484 GTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTG 425 Query 170597 ACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACT 170656 | || ||||| | || ||||| ||||||||||| |||||||| |||||||| || || | Sbjct 424 ATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATT 365 Query 170657 TCCCACTTGAC 170667 |||| || ||| Sbjct 364 TCCCTCTAGAC 354 >seq223 Length=428319 Score = 547 bits (606), Expect = 8e-151 Identities = 704/971 (73%), Gaps = 0/971 (0%) Strand=Plus/Plus Query 169697 ATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCC 169756 ||||| |||| ||||| | ||||| | ||| |||| ||||| ||||| |||||||| | Sbjct 58742 ATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTTGGTGTTTTGATGATTC 58801 Query 169757 CATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGG 169816 | | |||| | ||| | | ||||| | |||||||| || || || || || | Sbjct 58802 CTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATTGCTGCCCCTCCAGTAG 58861 Query 169817 ACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCT 169876 |||| ||||| || | |||||||| | || || | | ||||| ||||| ||||| | Sbjct 58862 ACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTT 58921 Query 169877 CTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAG 169936 ||||||| || |||| |||| || || || | ||||| || || || ||||||| Sbjct 58922 CTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTTTTACCCAATATGGGAAG 58981 Query 169937 CAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACT 169996 | ||| | | ||||| ||||| || ||||| ||||||||| | || || | | |||| Sbjct 58982 CGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATTGTTCTACACT 59041 Query 169997 TCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTA 170056 || | | || | || |||||||| | |||||||||| | |||| | |||| Sbjct 59042 TCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACTGAGTTTCCGTCTGGGTA 59101 Query 170057 TGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCT 170116 ||||||||||||| ||| |||||||| ||||| || | || || ||||| |||| Sbjct 59102 TGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGCGGCTACTGCTGTTTTCT 59161 Query 170117 TAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTA 170176 | | ||||| ||||||| ||| ||| || || || ||||||||||| ||||| |||| Sbjct 59162 TGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCCTCTAGGAATCTCTGGTA 59221 Query 170177 CATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATA 170236 | |||||||| ||| | |||||||| || ||||||||||| |||||||||||||| || | Sbjct 59222 CTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACA 59281 Query 170237 TGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTG 170296 || ||| || |||||| | ||||| || | || ||| || ||||| ||||| | | Sbjct 59282 TGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCTTTGG 59341 Query 170297 TAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAAT 170356 |||| ||| | | ||||| || || ||||| || || || || | || |||| || Sbjct 59342 TAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGAT 59401 Query 170357 TCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTA 170416 | || ||||| |||||||| || || || || || || ||||| || ||||| || | | Sbjct 59402 TTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGGTTATTTTGGCCGATTGA 59461 Query 170417 TCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCC 170476 |||||||||||||||| |||||||| ||| | | || |||||| | ||| | | | Sbjct 59462 TCTTCCAATATGCTAGTTTTAACAACTCTCGCTCTTTACATTTCTTCTTAGCTGCTTGGC 59521 Query 170477 CTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATG 170536 |||||||| | |||||||| ||| | | |||||| |||| ||||| || || || |||| Sbjct 59522 CTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAATCTAAATG 59581 Query 170537 GATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAG 170596 | || || |||||||| || | || ||| | ||| ||| || ||| ||||| | Sbjct 59582 GTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTG 59641 Query 170597 ACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACT 170656 | || ||||| | || ||||| ||||||||||| |||||||| |||||||| || || | Sbjct 59642 ATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATT 59701 Query 170657 TCCCACTTGAC 170667 |||| || ||| Sbjct 59702 TCCCTCTAGAC 59712 >seq218 Length=447883 Score = 226 bits (250), Expect = 3e-54 Identities = 365/524 (70%), Gaps = 18/524 (3%) Strand=Plus/Minus Query 169730 TTGGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCG 169789 |||| ||||| ||||| |||||||| || | |||| | ||| | | ||||| Sbjct 92964 TTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTCTGTATTTATTA 92905 Query 169790 TTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTT 169849 | |||||||| || || || || || ||||| ||||| || | |||||| | | || | Sbjct 92904 TCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTCTTTCTGGAT 92845 Query 169850 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 169909 | || ||||| ||||| ||||| |||||||| || |||| |||| || || | Sbjct 92844 TAA--ATTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAG 92787 Query 169910 GTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTG 169969 | | ||||| || || || |||||||| ||| | | ||||| ||||| || ||||| | Sbjct 92786 GGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCG 92727 Query 169970 GTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGAC 170029 |||||||| | || || | | |||||| | | || | || |||||||| | Sbjct 92726 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTG 92667 Query 170030 AGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTC 170089 |||||||||| | |||| | ||||||||||||||||| ||| |||||||| |||| Sbjct 92666 AGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 92607 Query 170090 CAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAG 170149 | || | || || ||||| ||||| | ||||| ||||||| ||| ||| || | Sbjct 92606 CTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGG 92547 Query 170150 ACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGC 170209 | || || || || ||||| || ||||| ||| |||||| || |||| Sbjct 92546 ATGG------TCCAG-----TCTGGTACTTTGAACTTTATG-----ATTCCAGGCTGAGC 92503 Query 170210 ACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGT 170253 ||||||| |||||||||||||| || || ||| || |||||| Sbjct 92502 ACAACATCCTTATGCACCCATTTCACATCTTAGGCGTAGCTGGT 92459 Score = 226 bits (250), Expect = 3e-54 Identities = 365/524 (70%), Gaps = 18/524 (3%) Strand=Plus/Minus Query 169730 TTGGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCG 169789 |||| ||||| ||||| |||||||| || | |||| | ||| | | ||||| Sbjct 367027 TTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTCTGTATTTATTA 366968 Query 169790 TTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTT 169849 | |||||||| || || || || || ||||| ||||| || | |||||| | | || | Sbjct 366967 TCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTCTTTCTGGAT 366908 Query 169850 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 169909 | || ||||| ||||| ||||| |||||||| || |||| |||| || || | Sbjct 366907 TAA--ATTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAG 366850 Query 169910 GTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTG 169969 | | ||||| || || || |||||||| ||| | | ||||| ||||| || ||||| | Sbjct 366849 GGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCG 366790 Query 169970 GTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGTAGAC 170029 |||||||| | || || | | |||||| | | || | || |||||||| | Sbjct 366789 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTG 366730 Query 170030 AGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTC 170089 |||||||||| | |||| | ||||||||||||||||| ||| |||||||| |||| Sbjct 366729 AGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 366670 Query 170090 CAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAG 170149 | || | || || ||||| ||||| | ||||| ||||||| ||| ||| || | Sbjct 366669 CTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGG 366610 Query 170150 ACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGC 170209 | || || || || ||||| || ||||| ||| |||||| || |||| Sbjct 366609 ATGG------TCCAG-----TCTGGTACTTTGAACTTTATG-----ATTCCAGGCTGAGC 366566 Query 170210 ACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGT 170253 ||||||| |||||||||||||| || || ||| || |||||| Sbjct 366565 ACAACATCCTTATGCACCCATTTCACATCTTAGGCGTAGCTGGT 366522 >seq421 Length=230418 Score = 190 bits (210), Expect = 2e-43 Identities = 305/438 (70%), Gaps = 0/438 (0%) Strand=Plus/Minus Query 170230 TTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGT 170289 || || ||| ||| || |||||| | ||||| || || || | ||||| ||| Sbjct 19671 TTTCACATGTTAGGCGTGGCTGGTGTATTCGGCGGCTTCCTATTTAATGTTATGCATGGT 19612 Query 170290 TCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGA 170349 || | ||||| ||| | | ||||| || || ||||| || || || || | || Sbjct 19611 TCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 19552 Query 170350 TACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGT 170409 |||| ||| || ||||| ||| |||| || || || | || | ||||| || |||||| Sbjct 19551 TACAGATTTGGTCAAGAGGAAAAAACTTATAATATCATAGCCACTCATGGTTATTTTGGT 19492 Query 170410 AGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCT 170469 | | ||||||||||||||||| |||||||| ||| | | || |||||| | ||| Sbjct 19491 CAATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGCTCTTTACATTTCTTCTTAGCT 19432 Query 170470 ACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAAC 170529 | | ||||||||| | |||| ||| | | | | |||||| |||| || || || || Sbjct 19431 GCTTGGCCTGTAGTAGGTATCTAGTTCATTGCTTTAGGTATTAGCACTATAGCTTTCAAT 19372 Query 170530 CTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACA 170589 || ||||| || | |||||||| | | || ||| | ||| ||| || ||| Sbjct 19371 CTAAATGGTTTCGATTTCAACCAATTTGTAGTTGATAGTCAAGGTTGTGTAATTAATACC 19312 Query 170590 TGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCA 170649 ||||| || || ||||| | || ||||| ||||||||| | |||||||| |||||||| Sbjct 19311 TGGGCTGATATTATTAACTGTGCTAACCTTGGTATGGAAATTATGCATGAACGTAATGCT 19252 Query 170650 CACAACTTCCCACTTGAC 170667 || || ||||| || ||| Sbjct 19251 CATAATTTCCCTCTAGAC 19234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582777948956000