Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq549 122 1e-22 seq23 118 1e-21 seq14 109 6e-19 seq435 107 2e-18 seq131 93.3 5e-14 seq677 86.0 7e-12 >seq549 Length=172529 Score = 122 bits (134), Expect = 1e-22 Identities = 235/345 (68%), Gaps = 9/345 (3%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || || ||||||||||| || || || |||| ||||| || || ||||| |||| Sbjct 30841 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAGC 30782 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 || ||||||| || | ||||||||||| ||||| | | ||| || || || ||| Sbjct 30781 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 30722 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 || ||||| || |||||||||||||| ||||| | |||| || | | | Sbjct 30721 ATCCCTTCCACGCAAGCAAAAGCAACTAGCCTTTCCGCGAAACT---CTCGCTCCCGTCA 30665 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 ||||| || ||||| |||||||| || || |||| || || |||| || | Sbjct 30664 ATCCACCGCAAGGCCCACCGTGCCTTCTTAGCCACGCACGGCACCGTTTCGATAGCATGA 30605 Query 19201 AATA---GATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTAC 19257 || | ||| | | ||| || | ||| || | ||| | || | || | ||||||| Sbjct 30604 AACAGGCGATTCTT---CTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTAC 30548 Query 19258 ATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAA 19302 || || || || ||||| || || || ||||| |||||||||||| Sbjct 30547 ATCTCGGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAA 30503 >seq23 Length=2045696 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||||| || | || | |||||||| ||||| ||| Sbjct 906676 CCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCCA 906617 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| ||||||||||||| | || | || || || || Sbjct 906616 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGAT 906557 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || |||| || | ||||||| || | |||||||| ||| Sbjct 906556 ACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATATT 906497 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 906496 CCTTCAATACTATCATCTTTCAT 906474 >seq14 Length=2767599 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||||| || | || || |||||||| |||| ||| Sbjct 700399 CCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAACGCCA 700458 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| || || ||||||||||||| | || | || || || Sbjct 700459 TTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGAT 700518 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || ||||| |||| || | ||||||| || | |||||||| ||| Sbjct 700519 ACACCGATTCCTCCTGCTGATTTACTGATAATAGCACACTCCTTCAATGTATCATATATT 700578 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 700579 CCTTCAATACTATCATCTTTCAT 700601 >seq435 Length=220439 Score = 107 bits (118), Expect = 2e-18 Identities = 373/581 (64%), Gaps = 7/581 (1%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || || ||||||||||| || || || |||| ||||| || || || || || | Sbjct 104629 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGG 104688 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 || ||||| || || | |||||||| ||| ||||| | | ||| || || || ||| Sbjct 104689 CCTGGCATTAGCCCACGTTTTTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 104748 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAA--CTAGCATCATTATTAT 19138 || ||||| || ||||| || | || || || || || || || || | | Sbjct 104749 ATCCCTTCCACGCAAGCAAATGCGATTAACCTCTCCGCAAAACTCTCGCCTCCGTCT--- 104805 Query 19139 GAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAAT 19198 ||||| | ||||| || |||||||| ||||| |||| ||||| || | || Sbjct 104806 --ATCCACCGTAAAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCAT 104863 Query 19199 TAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258 ||| ||| | |||| | ||| || | || | || | ||| | |||||||| Sbjct 104864 GAAACAGACGGTTCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACA 104923 Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 | || || || ||||| || || || ||||| || ||||| ||| | || || | | Sbjct 104924 TCTCCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGA 104983 Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 || ||||| | || | || | | ||| || || ||||||||| || | Sbjct 104984 CTTGGACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCAG 105043 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATTCCAAT 19438 | || || || | || || ||| || ||||| || || | || | | | ||| | Sbjct 105044 CGAAGAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGT 105103 Query 19439 CATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTT 19498 | | |||| ||| | ||| || |||||| | |||||||| || || || || || | Sbjct 105104 GACGGAGATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAGCCTTCT 105163 Query 19499 TATACATGTTCCATATATCACGATATTGTATAGGAAATATA 19539 | ||||| | ||| || ||||||| || || || ||| Sbjct 105164 TGTACATCTCCCAGATTGATGGATATTGAATTGGGAACATA 105204 >seq131 Length=684295 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||| ||||| | |||| | ||| || || ||||| Sbjct 385247 CCTCCTTGATCAACATAGCGAGCAGTGTTGTTGAACACTCGAAGCATGGGAACTATACCG 385188 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || ||||||| || ||| ||| ||||| || | || |||||| || | | Sbjct 385187 TTGGAAGTACCATTTGTCCCCTGAATGTAACTGCCTGTGGCGTGGATATTATGAACAGCA 385128 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 ||||| || || || || | ||| || | ||||||| || || |||||||| || Sbjct 385127 ATACCAATTCCTCCAGCTAATTTGCTAATAACAGCACACTCCTTCAGAGTATCATATATG 385068 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACT 48580 ||| | || || |||||| |||| | ||||| ||||| Sbjct 385067 CCTCCAATGCTGTCATCTTTCATGCACAGGAGAAAGCAACT 385027 >seq677 Length=132271 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| || ||||| || |||||||||||| ||| | |||||| || ||||| ||| Sbjct 92636 CAAGCAAAGTCGCAATGCAGCCCCTCGTCTCTAGATATTAGTTCATTCGAGAATGTCAAA 92577 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATAT 19055 || ||||||| ||||| ||||| | |||||| || Sbjct 92576 CCTGGCATCAAGCCTCTCTTTTTAAGCCAGAAAAT 92542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562041241548600