Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq9615 515 1e-141 seq223 515 1e-141 seq218 217 4e-52 seq421 158 4e-34 >seq9615 Length=156766 Score = 515 bits (570), Expect = 1e-141 Identities = 707/988 (72%), Gaps = 0/988 (0%) Strand=Plus/Plus Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027 |||| |||||||| || ||||| || || || ||||| ||||||||||||||||| || | Sbjct 344 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 403 Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 36087 || |||||||||| ||| |||||||| || | || | || | |||||| | Sbjct 404 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 463 Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147 | || || ||||| || || || || ||||| |||||||||||| | || | ||| | Sbjct 464 CAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAG 523 Query 36148 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTAT 36207 | | ||| || | || ||||||||||| | ||||||||||||| ||| || | Sbjct 524 TGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAGCGAGAGTTGT 583 Query 36208 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 36267 |||| |||||||| |||||||| | || ||||| || |||||||| || || || |||| Sbjct 584 TAAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 643 Query 36268 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 36327 | || ||||| ||||| || ||| | || || | || ||||||| | || |||| Sbjct 644 AAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 703 Query 36328 CACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 36387 | | || | || || || | | || ||||||||| ||||| | || |||| Sbjct 704 CCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 763 Query 36388 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAA 36447 |||| || || || || | ||| || || || ||||||||||| ||||| || ||||| | Sbjct 764 ATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 823 Query 36448 AGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCC 36507 | |||| |||||| || ||||| || || || || |||||||| ||||| || ||||| | Sbjct 824 ATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTC 883 Query 36508 CTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAG 36567 |||| || | || || | ||||| |||||| || || |||||||| |||||||| | Sbjct 884 CTTGACCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATG 943 Query 36568 CTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGT 36627 | ||| ||||| || | |||||| || | |||| |||||||| | || |||| || Sbjct 944 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGCCCCATGT 1003 Query 36628 AAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATA 36687 || | | ||||| | ||||| | ||||| || | ||| || || ||||| |||| Sbjct 1004 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATA 1063 Query 36688 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCG 36747 |||| || || | || ||| |||||||| |||||||| ||||| | || || || | Sbjct 1064 ACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAG 1123 Query 36748 ATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAG 36807 | | || | || || ||||| ||||| ||||||||||| |||| | ||| || |||| Sbjct 1124 AAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAG 1183 Query 36808 GCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG 36867 | |||||||||||||| || || || ||||| ||||||| || || || | |||| | | Sbjct 1184 GTTCACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAG 1243 Query 36868 TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGT 36927 ||| || || | | ||| ||||| | || |||||||| || | ||| || |||| Sbjct 1244 AAGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGGT 1303 Query 36928 TGTTTGTACTTGTAACCCAGTCACATAA 36955 | | || || || | ||| | ||| || Sbjct 1304 TTTCAGTGCTGGTTATCCAATTACAGAA 1331 >seq223 Length=428319 Score = 515 bits (570), Expect = 1e-141 Identities = 707/988 (72%), Gaps = 0/988 (0%) Strand=Plus/Minus Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027 |||| |||||||| || ||||| || || || ||||| ||||||||||||||||| || | Sbjct 59722 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 59663 Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 36087 || |||||||||| ||| |||||||| || | || | || | |||||| | Sbjct 59662 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 59603 Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147 | || || ||||| || || || || ||||| |||||||||||| | || | ||| | Sbjct 59602 CAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAG 59543 Query 36148 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTAT 36207 | | ||| || | || ||||||||||| | ||||||||||||| ||| || | Sbjct 59542 TGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAGCGAGAGTTGT 59483 Query 36208 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 36267 |||| |||||||| |||||||| | || ||||| || |||||||| || || || |||| Sbjct 59482 TAAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 59423 Query 36268 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 36327 | || ||||| ||||| || ||| | || || | || ||||||| | || |||| Sbjct 59422 AAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 59363 Query 36328 CACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 36387 | | || | || || || | | || ||||||||| ||||| | || |||| Sbjct 59362 CCCTGATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGA 59303 Query 36388 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAA 36447 |||| || || || || | ||| || || || ||||||||||| ||||| || ||||| | Sbjct 59302 ATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGA 59243 Query 36448 AGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCC 36507 | |||| |||||| || ||||| || || || || |||||||| ||||| || ||||| | Sbjct 59242 ATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTC 59183 Query 36508 CTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAG 36567 |||| || | || || | ||||| |||||| || || |||||||| |||||||| | Sbjct 59182 CTTGACCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATG 59123 Query 36568 CTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGT 36627 | ||| ||||| || | |||||| || | |||| |||||||| | || |||| || Sbjct 59122 CAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGCCCCATGT 59063 Query 36628 AAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATA 36687 || | | ||||| | ||||| | ||||| || | ||| || || ||||| |||| Sbjct 59062 AACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATA 59003 Query 36688 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCG 36747 |||| || || | || ||| |||||||| |||||||| ||||| | || || || | Sbjct 59002 ACCATTCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAG 58943 Query 36748 ATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAG 36807 | | || | || || ||||| ||||| ||||||||||| |||| | ||| || |||| Sbjct 58942 AAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAG 58883 Query 36808 GCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG 36867 | |||||||||||||| || || || ||||| ||||||| || || || | |||| | | Sbjct 58882 GTTCACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAG 58823 Query 36868 TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGT 36927 ||| || || | | ||| ||||| | || |||||||| || | ||| || |||| Sbjct 58822 AAGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGGT 58763 Query 36928 TGTTTGTACTTGTAACCCAGTCACATAA 36955 | | || || || | ||| | ||| || Sbjct 58762 TTTCAGTGCTGGTTATCCAATTACAGAA 58735 Score = 93.3 bits (102), Expect = 1e-14 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027 |||| |||||||| || ||||| || || || ||||| ||||||||||||||||| || | Sbjct 93595 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 93536 Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGT 36058 || |||||||||| ||| |||||||| || Sbjct 93535 GGTTAGCACGGTTAATAATATCAGCCCAGGT 93505 >seq218 Length=447883 Score = 217 bits (240), Expect = 4e-52 Identities = 352/506 (70%), Gaps = 18/506 (4%) Strand=Plus/Plus Query 36408 ATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAA 36467 || || || || ||||||||||| ||||| || ||||| || |||||| || ||| Sbjct 92475 ATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT-----CATAAAGTTCAAA 92529 Query 36468 GTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACT 36527 || || || || |||||| || ||||| ||||| || | || || | Sbjct 92530 GTACCAGACT--------GG---ACCATCCGAAAAACTTCCTTGACCGATTGGATAAATC 92578 Query 36528 AAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTC 36587 ||||| |||||| || || |||||||| |||||||| || ||| ||||| || | | Sbjct 92579 AAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGC 92638 Query 36588 ATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGA 36647 ||||| || | |||| |||||||| | || |||| |||| | | ||||| | Sbjct 92639 ATACCCAGACGGAAACTCAGTTCCCACTCACGCCCCATGTAACAAGCTACACCAAGTAAG 92698 Query 36648 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 36707 ||||| | ||||| || | ||| || || ||||| |||||||| || || | || ||| Sbjct 92699 AAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGCC 92758 Query 36708 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCA 36767 |||||||| |||||||| ||||| | || || || || | || | || || ||| Sbjct 92759 GCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGTAGGAATAATGGCACCA 92818 Query 36768 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 36827 || ||||| ||||||||||| | | | ||| || | ||| |||||||||||||| || Sbjct 92819 GAAATGATATTGTTTCCATAAATT--TAATCCAGAAAGAGGTTCACGAATACCATCAATG 92876 Query 36828 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 36887 || || ||||| ||||||| || || || | |||| | | ||| || || | | | Sbjct 92877 TCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTA 92936 Query 36888 GGGATCATTAGTACCCCAAACCACCC 36913 || ||||| | || |||||||| || Sbjct 92937 GGAATCATCAAAACACCAAACCATCC 92962 Score = 217 bits (240), Expect = 4e-52 Identities = 352/506 (70%), Gaps = 18/506 (4%) Strand=Plus/Plus Query 36408 ATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAA 36467 || || || || ||||||||||| ||||| || ||||| || |||||| || ||| Sbjct 366538 ATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT-----CATAAAGTTCAAA 366592 Query 36468 GTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACT 36527 || || || || |||||| || ||||| ||||| || | || || | Sbjct 366593 GTACCAGACT--------GG---ACCATCCGAAAAACTTCCTTGACCGATTGGATAAATC 366641 Query 36528 AAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTC 36587 ||||| |||||| || || |||||||| |||||||| || ||| ||||| || | | Sbjct 366642 AAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGC 366701 Query 36588 ATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGA 36647 ||||| || | |||| |||||||| | || |||| |||| | | ||||| | Sbjct 366702 ATACCCAGACGGAAACTCAGTTCCCACTCACGCCCCATGTAACAAGCTACACCAAGTAAG 366761 Query 36648 AAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCA 36707 ||||| | ||||| || | ||| || || ||||| |||||||| || || | || ||| Sbjct 366762 AAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGCC 366821 Query 36708 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCA 36767 |||||||| |||||||| ||||| | || || || || | || | || || ||| Sbjct 366822 GCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGTAGGAATAATGGCACCA 366881 Query 36768 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 36827 || ||||| ||||||||||| | | | ||| || | ||| |||||||||||||| || Sbjct 366882 GAAATGATATTGTTTCCATAAATT--TAATCCAGAAAGAGGTTCACGAATACCATCAATG 366939 Query 36828 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 36887 || || ||||| ||||||| || || || | |||| | | ||| || || | | | Sbjct 366940 TCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTA 366999 Query 36888 GGGATCATTAGTACCCCAAACCACCC 36913 || ||||| | || |||||||| || Sbjct 367000 GGAATCATCAAAACACCAAACCATCC 367025 >seq421 Length=230418 Score = 158 bits (174), Expect = 4e-34 Identities = 243/347 (70%), Gaps = 0/347 (0%) Strand=Plus/Plus Query 35968 CAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 36027 |||| |||||||| || ||||| || || || ||||| |||||||||| |||||| || | Sbjct 19224 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAATTTCCATACCAA 19283 Query 36028 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 36087 || |||| ||||| ||| |||||||| || | || | || | |||||| | Sbjct 19284 GGTTAGCACAGTTAATAATATCAGCCCAGGTATTAATTACACAACCTTGACTATCAACTA 19343 Query 36088 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 36147 | | || ||||| | || || || ||||| ||||| |||||| | || | ||| Sbjct 19344 CAAATTGGTTGAAATCGAAACCATTTAGATTGAAAGCTATAGTGCTAATACCTAAAGCAA 19403 Query 36148 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTAT 36207 | | | | || | || ||||||||||| | ||||||||||||| ||| || | Sbjct 19404 TGAACTAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAGCGAGAGTTGT 19463 Query 36208 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 36267 |||| |||||||| |||||||| | | ||||| || ||||||| || | || |||| Sbjct 19464 TAAAACTAGCATATTGGAAGATCAATTGACCAAAATAACCATGAGTGGCTATGATATTAT 19523 Query 36268 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCA 36314 | || | ||| ||||| || ||| | || || | || ||||||| Sbjct 19524 AAGTTTTTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCA 19570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150437221398710