Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq9615 488 2e-133 seq223 488 2e-133 seq218 199 1e-46 seq421 149 2e-31 >seq9615 Length=156766 Score = 488 bits (540), Expect = 2e-133 Identities = 698/983 (71%), Gaps = 0/983 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||| || || || ||||| ||||||||||||||||| || | || Sbjct 349 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 408 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| ||| |||||||| || | || | || | |||||| || || Sbjct 409 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 468 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || ||||| |||||||||||| | || | ||| || | | Sbjct 469 TGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 528 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| | ||||||||||||| || || ||||| Sbjct 529 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAGCGAGAGTTGTTAAAA 588 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || || || ||||| || Sbjct 589 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 648 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| || ||| | || || | || ||||||| | || ||||| | Sbjct 649 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 708 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | || || || | | || ||||||||| ||||| | || |||||||| Sbjct 709 ATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 768 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || || || | ||| || || || ||||||||||| ||||| || ||||| || ||| Sbjct 769 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 828 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | |||||| || ||||| || || || || |||||||| ||||| || ||||| ||||| Sbjct 829 ATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTCCTTGA 888 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 || | || || | ||||| |||||| || || |||||||| |||||||| || ||| Sbjct 889 CCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACA 948 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 26112 ||||| || | ||| || || | |||| |||||||| | || |||| |||| Sbjct 949 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGCCCCATGTAACAA 1008 Query 26113 GAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCAC 26172 | | || | | ||||| | ||||| || | ||| || || ||||| || ||||| Sbjct 1009 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCAT 1068 Query 26173 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC 26232 || || | || ||| |||||||| |||||||| ||||| | || || || ||| | Sbjct 1069 TCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGTA 1128 Query 26233 GGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 26292 || | || || || || ||||| ||||||||||| |||| | ||| || ||||| ||| Sbjct 1129 GGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 1188 Query 26293 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 26352 ||||||||||| || || || ||||| ||||||| || || || | |||| | | | Sbjct 1189 CGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTT 1248 Query 26353 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTT 26412 || || || | | ||| ||||| | || |||||||| || | ||| || ||||| | Sbjct 1249 GCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGGTTTTCA 1308 Query 26413 GTACTTGTAACCCAGTCACATAA 26435 || || || | ||| | ||| || Sbjct 1309 GTGCTGGTTATCCAATTACAGAA 1331 >seq223 Length=428319 Score = 488 bits (540), Expect = 2e-133 Identities = 698/983 (71%), Gaps = 0/983 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||| || || || ||||| ||||||||||||||||| || | || Sbjct 59717 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 59658 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| ||| |||||||| || | || | || | |||||| || || Sbjct 59657 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 59598 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || ||||| |||||||||||| | || | ||| || | | Sbjct 59597 TGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 59538 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| | ||||||||||||| || || ||||| Sbjct 59537 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAGCGAGAGTTGTTAAAA 59478 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || || || ||||| || Sbjct 59477 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 59418 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| || ||| | || || | || ||||||| | || ||||| | Sbjct 59417 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 59358 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | || || || | | || ||||||||| ||||| | || |||||||| Sbjct 59357 ATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 59298 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || || || | ||| || || || ||||||||||| ||||| || ||||| || ||| Sbjct 59297 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 59238 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | |||||| || ||||| || || || || |||||||| ||||| || ||||| ||||| Sbjct 59237 ATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTCCTTGA 59178 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 || | || || | ||||| |||||| || || |||||||| |||||||| || ||| Sbjct 59177 CCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACA 59118 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCT 26112 ||||| || | ||| || || | |||| |||||||| | || |||| |||| Sbjct 59117 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGCCCCATGTAACAA 59058 Query 26113 GAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCAC 26172 | | || | | ||||| | ||||| || | ||| || || ||||| || ||||| Sbjct 59057 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCAT 58998 Query 26173 TCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGAC 26232 || || | || ||| |||||||| |||||||| ||||| | || || || ||| | Sbjct 58997 TCATCAACGGATGCCGCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGTA 58938 Query 26233 GGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCA 26292 || | || || || || ||||| ||||||||||| |||| | ||| || ||||| ||| Sbjct 58937 GGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCA 58878 Query 26293 CGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACT 26352 ||||||||||| || || || ||||| ||||||| || || || | |||| | | | Sbjct 58877 CGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTT 58818 Query 26353 GCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTT 26412 || || || | | ||| ||||| | || |||||||| || | ||| || ||||| | Sbjct 58817 GCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGGTTTTCA 58758 Query 26413 GTACTTGTAACCCAGTCACATAA 26435 || || || | ||| | ||| || Sbjct 58757 GTGCTGGTTATCCAATTACAGAA 58735 Score = 87.8 bits (96), Expect = 5e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||| || || || ||||| ||||||||||||||||| || | || Sbjct 93590 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 93531 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGT 25538 |||||||||| ||| |||||||| || Sbjct 93530 GCACGGTTAATAATATCAGCCCAGGT 93505 >seq218 Length=447883 Score = 199 bits (220), Expect = 1e-46 Identities = 348/506 (69%), Gaps = 18/506 (4%) Strand=Plus/Plus Query 25888 ATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAA 25947 || || || || ||||||||||| ||||| || ||||| || |||||| || ||| Sbjct 92475 ATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT-----CATAAAGTTCAAA 92529 Query 25948 GTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACT 26007 || || || || |||||| || ||||| ||||| || | || || | Sbjct 92530 GTACCAGACT--------GG---ACCATCCGAAAAACTTCCTTGACCGATTGGATAAATC 92578 Query 26008 AAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTC 26067 ||||| |||||| || || |||||||| |||||||| || ||| ||||| || | | Sbjct 92579 AAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGC 92638 Query 26068 ATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGA 26127 || || || | |||| |||||||| | || |||| |||| | | || | | Sbjct 92639 ATACCCAGACGGAAACTCAGTTCCCACTCACGCCCCATGTAACAAGCTACACCAAGTAAG 92698 Query 26128 AAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCA 26187 ||||| | ||||| || | ||| || || ||||| || ||||| || || | || ||| Sbjct 92699 AAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGCC 92758 Query 26188 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 26247 |||||||| |||||||| ||||| | || || || ||| | || | || || || Sbjct 92759 GCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGTAGGAATAATGGCACCA 92818 Query 26248 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 26307 || ||||| ||||||||||| | | | ||| || | ||| |||||||||||||| || Sbjct 92819 GAAATGATATTGTTTCCATAAATT--TAATCCAGAAAGAGGTTCACGAATACCATCAATG 92876 Query 26308 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 26367 || || ||||| ||||||| || || || | |||| | | ||| || || | | | Sbjct 92877 TCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTA 92936 Query 26368 GGGATCATTAGTACCCCAAACCACCC 26393 || ||||| | || |||||||| || Sbjct 92937 GGAATCATCAAAACACCAAACCATCC 92962 Score = 199 bits (220), Expect = 1e-46 Identities = 348/506 (69%), Gaps = 18/506 (4%) Strand=Plus/Plus Query 25888 ATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAA 25947 || || || || ||||||||||| ||||| || ||||| || |||||| || ||| Sbjct 366538 ATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT-----CATAAAGTTCAAA 366592 Query 25948 GTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACT 26007 || || || || |||||| || ||||| ||||| || | || || | Sbjct 366593 GTACCAGACT--------GG---ACCATCCGAAAAACTTCCTTGACCGATTGGATAAATC 366641 Query 26008 AAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTC 26067 ||||| |||||| || || |||||||| |||||||| || ||| ||||| || | | Sbjct 366642 AAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGC 366701 Query 26068 ATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGA 26127 || || || | |||| |||||||| | || |||| |||| | | || | | Sbjct 366702 ATACCCAGACGGAAACTCAGTTCCCACTCACGCCCCATGTAACAAGCTACACCAAGTAAG 366761 Query 26128 AAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCA 26187 ||||| | ||||| || | ||| || || ||||| || ||||| || || | || ||| Sbjct 366762 AAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGCC 366821 Query 26188 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 26247 |||||||| |||||||| ||||| | || || || ||| | || | || || || Sbjct 366822 GCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGTAGGAATAATGGCACCA 366881 Query 26248 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 26307 || ||||| ||||||||||| | | | ||| || | ||| |||||||||||||| || Sbjct 366882 GAAATGATATTGTTTCCATAAATT--TAATCCAGAAAGAGGTTCACGAATACCATCAATG 366939 Query 26308 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 26367 || || ||||| ||||||| || || || | |||| | | ||| || || | | | Sbjct 366940 TCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTA 366999 Query 26368 GGGATCATTAGTACCCCAAACCACCC 26393 || ||||| | || |||||||| || Sbjct 367000 GGAATCATCAAAACACCAAACCATCC 367025 >seq421 Length=230418 Score = 149 bits (164), Expect = 2e-31 Identities = 238/342 (70%), Gaps = 0/342 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| |||||||| || || || ||||| |||||||||| |||||| || | || Sbjct 19229 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAATTTCCATACCAAGGTTA 19288 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||| ||||| ||| |||||||| || | || | || | |||||| || | Sbjct 19289 GCACAGTTAATAATATCAGCCCAGGTATTAATTACACAACCTTGACTATCAACTACAAAT 19348 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| | || || || ||||| ||||| |||||| | || | ||| | | | Sbjct 19349 TGGTTGAAATCGAAACCATTTAGATTGAAAGCTATAGTGCTAATACCTAAAGCAATGAAC 19408 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 | || | || ||||||||||| | ||||||||||||| || || ||||| Sbjct 19409 TAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAGCGAGAGTTGTTAAAA 19468 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | | ||||| || ||||||| || | || ||||| || Sbjct 19469 CTAGCATATTGGAAGATCAATTGACCAAAATAACCATGAGTGGCTATGATATTATAAGTT 19528 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCA 25794 | ||| ||||| || ||| | || || | || ||||||| Sbjct 19529 TTTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCA 19570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151976245655740