Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq435 114 2e-20 seq549 96.9 6e-15 >seq435 Length=220439 Score = 114 bits (126), Expect = 2e-20 Identities = 350/534 (66%), Gaps = 18/534 (3%) Strand=Plus/Plus Query 48040 AAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGG 48099 ||||||| ||||||| | ||| || ||| ||| ||| ||| ||||| ||| | Sbjct 104541 AAACTCCCTCTCTATATCCACAGCCTCCTTCACTATCCCCTTCACGCGCTCCTCACTCAG 104600 Query 48100 TTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTC 48159 ||| || | || | || || || | ||| || || || | || | ||||| || Sbjct 104601 TTTCTTCCTCAACAGGCTG---TAAAGAAGGCACGCGAAATCACAATGAAGCCCTTCATC 104657 Query 48160 CCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCA 48219 || ||| | | |||| |||||| || || ||||| | ||| | | ||| ||||| Sbjct 104658 TCGCGAGATCAACTCGTTCGAGAAGGTCAGGCCTGGCATTAGCCCACGTTTTTTTAGCCA 104717 Query 48220 GAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAG 48279 || || || ||| || ||||| || || || ||||| || || ||| | | Sbjct 104718 AAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCCACGCAAGCAAATGCGATTAA 104777 Query 48280 CCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCA--GGAAAGCGCCCAGTCTGCCTTC 48337 |||||| | ||| || |||| ||||| | ||||| ||| || |||||| Sbjct 104778 CCTCTCCGCAAAACTCTCGCCTCCGTCT---ATCCACCGTAAAGC--CCACTCCGCCTTC 104832 Query 48338 TTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGC---TTCTTGCACTCACCTGCG 48394 || | || |||| |||||| ||||| | || || ||||| |||| | Sbjct 104833 TTAGCCACACACGGCACCGTCTCAATGGCATGAAACAGACGGTTCTT---CTCAGTAGAA 104889 Query 48395 TCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCG 48454 ||| | ||||| | || ||||||||| ||||| | |||||| || ||| Sbjct 104890 TCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTCCGAGTGGATATTCTCAATCGCG 104949 Query 48455 ATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCC 48514 ||||||||||||||||| || | ||||| | || || |||||| | ||| | | || Sbjct 104950 ATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGGACTTCTTTCATGAAACGC-CC 105008 Query 48515 AGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATG 48567 || | |||||| ||| || ||||| || ||||| |||||||||||||| || Sbjct 105009 GGCGATATTCTCGAGGACGATTCCATCAGAGGCAGCGAAGAAGGCAAGGACGTG 105062 >seq549 Length=172529 Score = 96.9 bits (106), Expect = 6e-15 Identities = 110/145 (76%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| ||||| | |||||| || ||||||||||| ||||| || || | ||||| Sbjct 30551 GTACATCTCGGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTC 30492 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTG 48542 | || || || ||| | ||| | | || || ||||| || ||| |||||||| | Sbjct 30491 CGAGACTTGGACCTCTTTCATGAAACGC-CCGGCGAGATTTTCGAGGACAATCCCATCAG 30433 Query 48543 AAGCAGCAAAGAAGGCAAGGACATG 48567 | || || ||||||||||||||||| Sbjct 30432 AGGCGGCGAAGAAGGCAAGGACATG 30408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931420841401600