Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq549 111 3e-19 >seq549 Length=172529 Score = 111 bits (122), Expect = 3e-19 Identities = 376/575 (65%), Gaps = 23/575 (4%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||| ||| | ||| ||||| || || ||| | ||||| Sbjct 30291 ATCTGGGAGATGTACAAGAAAGCTGAGGCCTCCTTTTGGACTGCTGAGGAGGTCGATCTC 30350 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTT----TCTCAA 25592 | ||| || | |||| | || | |||||| |||| || ||||| Sbjct 30351 TCGTCGGATATCCGCCACTGGGAAAACCTGACTCCCGACGAGAAGCACTTCATCTCTCAT 30410 Query 25593 GTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAG 25652 || | || | ||||| || ||||||||||| || || ||| ||||| || | | Sbjct 30411 GTCCTTG----CCTTCTTCGCCGCCTCTGATGGGATTGTCCTCGAAAATCTCGCCGGGCG 30466 Query 25653 ATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTG-TTTCTACGGTTTCCAGATGGCCA 25711 |||| | || || || | |||||| ||| ||| ||||| |||||||| || | Sbjct 30467 TTTCATGAAAGAGGTCCAAGTCTCGGAGGCGC-GTGCTTTTTACGGATTCCAGATCGCGA 30525 Query 25712 TCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACG 25768 | || ||| | ||||| ||| |||| || |||||| || || || || | || Sbjct 30526 TTGAGAATATCCACTCCGAGATGTA---CAGTCTTCTGTTGGAGACTTATATCAAGGATT 30582 Query 25769 TCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGG 25828 | |||| |||| |||||| ||| ||||| | || || | | ||||| Sbjct 30583 CTGAGGAGAAGAATCGCCTGTTTCATGCTATCGAAACGGTGCCGTGCGTGGCTAAGAAGG 30642 Query 25829 CGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCG-AGCGGCTGGTA 25887 | ||||||||| || |||||| || | ||||| | |||| ||| | |||| || Sbjct 30643 CACGGTGGGCCTTGCGGTGGATTGACGG---GAGCGAGA-GTTTCGCGGAAAGGCTAGTT 30698 Query 25888 GCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG-GCCATCTTCTGGCT 25946 || |||||| ||||| || || |||||| ||| |||| | || || || ||| | Sbjct 30699 GCTTTTGCTTGCGTGGAAGGGATATTTTTCT-CGGGGAGTTTTTGTGCGATATTTTGGTT 30757 Query 25947 CAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGA 26006 || || ||| ||||| ||||| |||||| |||||| | ||| | || || Sbjct 30758 AAAAAAGCGTGGGTTGATGCCGGGGCTAACCTTTTCGAACGAGTTGATCTCGCGAGATGA 30817 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 || || || | ||||| || ||||||||||||| Sbjct 30818 AGGGCTTCATTGTGATTTCGCGTGCCTGCTCTACA 30852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928733164465600