Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_019706.1 Length=42780 Score E Sequences producing significant alignments: (Bits) Value seq5129 120 8e-23 >seq5129 Length=4579 Score = 120 bits (132), Expect = 8e-23 Identities = 158/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 3677 ACCGCGAGCTGATGATTCAGCCCGGTATGCTCTATGACGAACTGCAGGCCGGGGAAGAAA 3736 ||||||| || ||| | |||||| || || ||||| |||| |||| ||||| Sbjct 1124 ACCGCGACATGCAGATGCGTCCCGGTCTGATCGTGGACGACCTGCTCCCCGGCGAAGACG 1065 Query 3737 TCGGGATGATTAAATCCGATCGCCCGAACCCTAACCTCGAATCTTTTCGTAACGGACAGC 3796 |||||||||| || |||||||| |||||||| ||| | ||| || | ||||| | Sbjct 1064 TCGGGATGATCAAGTCCGATCGTCCGAACCCCAACGCGGTCACTTGGCGCGAAGGACAAC 1005 Query 3797 TGCGTGCCGTGTCCGCCGGCAGTCGCCTCAGCTTTTCCAGCACAT---CCAGAAACTACA 3853 |||| || ||||||| |||| ||| || ||| |||| | ||| ||||||| Sbjct 1004 TGCGCGCGGTGTCCGGCGGCGTGCGCGTCTCCTT---CAGCTCGCTCGCCAAGAACTACA 948 Query 3854 ACGGAACGTACAGTGCCCAGCGGCAGGAGCTTGTCGAG 3891 |||| || ||||| || |||||||||||||| |||||| Sbjct 947 ACGGCACCTACAGCGCTCAGCGGCAGGAGCTGGTCGAG 910 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136758783355460