Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq26 98.7 8e-16 seq78 91.5 1e-13 seq189 89.7 4e-13 >seq26 Length=1968749 Score = 98.7 bits (108), Expect = 8e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 28627 ATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCT 28686 || ||||| ||||||| ||||||||||| | ||| |||||||||||| ||||||| Sbjct 78770 ATGTCAAGGCAAAAATCCAGGACAAAGAGGGCATCCCCCCAGATCAACAGAGGCTTATCT 78829 Query 28687 TTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAAT 28746 |||| ||||| || |||| ||| ||| | || || || |||||||| || || | Sbjct 78830 TTGCTGGCAAGCAGCTGGAGGATGGACGCACTCTTGCTGACTACAACATTCAGAAGGAGT 78889 Query 28747 CTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||||| ||| |||| | | || || ||||| || Sbjct 78890 CTACTCTTCACTTGGTGCTGCGCTTGCGTGGAGGTAT 78926 >seq78 Length=1009284 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| || || || || || ||||| || |||| || Sbjct 201115 ATGCAGATCTTTGTGAAAACCTTGACAGGAAAGACAATTACTTTGGAGGTGGAAAGCTCG 201056 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || ||||| ||| ||| || || |||||| | || |||||| Sbjct 201055 GATACCATTGATAATGTCAAGACAAAGATCCAAGATAAGGAGGGAATTCCACCAGATCAG 200996 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || |||||| | || || | ||| | || || ||||| Sbjct 200995 CAGAGGCTTATCTTTGCTGGGAAACAACTTGAGGAAGGTCGCACTCTTGCAGACTATAAT 200936 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || ||||| ||||||||| |||| | || | || || ||||| Sbjct 200935 ATCCAGAAGGAATCAACTCTGCACTTGGTGCTCCGACTGCGTGGTGGGAT 200886 >seq189 Length=529659 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 ||||| || || | ||| ||||| ||||| || |||||||| || || || |||||| Sbjct 461624 GACAAGGAAGGGATTCCCCCGGATCAGCAGAGGCTCATCTTTGCAGGGAAGCAGTTGGAA 461683 Query 28707 GATTCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTATTA 28766 || | ||| | || ||||||||||||||||| || ||||||||||| ||||| | Sbjct 461684 GAGGGGAGGACTCTTGCGGATTATAACATTCAAAAGGAGTCTACTCTGCATCTGGTACTG 461743 Query 28767 AGATTACGAGGAGGGAT 28783 | || |||| ||||| Sbjct 461744 CGTTTGAGAGGCGGGAT 461760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425354949869085