Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq14 93.3 2e-14 seq23 91.5 7e-14 >seq14 Length=2767599 Score = 93.3 bits (102), Expect = 2e-14 Identities = 156/223 (70%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 ||||||| || || ||||| |||||||| || || | ||||| |||||||| || ||| Sbjct 700382 TACCTTTCCTCTTGCCTCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCA 700441 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||||||||| | ||| | || || ||||| | | |||| | ||| || | | Sbjct 700442 ACATTGGAACAACGCCATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCAC 700501 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTT--TGA-AATAGCTGCACAAT 26240 || | ||| ||| | ||||||||| || || |||| ||| |||| ||||| | Sbjct 700502 GGATGTTGTGGGCAGATACACCGATTCCTCCTGCTGATTTACTGATAATA---GCACACT 700558 Query 26241 CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | | |||||| | ||||||| || |||||| ||||||| Sbjct 700559 CCTTCAATGTATCATATATTCCTTCAATACTATCATCTTTCAT 700601 >seq23 Length=2045696 Score = 91.5 bits (100), Expect = 7e-14 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123 ||||||| || || ||||| |||||||| || || | ||||| |||||||| || || Sbjct 906693 TACCTTTCCTCTTGCCTCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCA 906634 Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183 |||||||||| | ||| | || || ||||| | | |||| | ||| || | | Sbjct 906633 ACATTGGAACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCAC 906574 Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243 || | |||| || | ||| ||||| ||||| |||| ||| | ||||| || Sbjct 906573 GGATGTTGTGAACAGATACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCT 906514 Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283 | |||||| | ||||||| || |||||| ||||||| Sbjct 906513 TCAATGTATCATATATTCCTTCAATACTATCATCTTTCAT 906474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253010348061125