Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12]
9,615 sequences; 496,032,534 total letters
Query= NC_020842.1
Length=79114
Score E
Sequences producing significant alignments: (Bits) Value
seq14 93.3 2e-14
seq23 91.5 7e-14
>seq14
Length=2767599
Score = 93.3 bits (102), Expect = 2e-14
Identities = 156/223 (70%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123
||||||| || || ||||| |||||||| || || | ||||| |||||||| || |||
Sbjct 700382 TACCTTTCCTCTTGCCTCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCA 700441
Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183
|||||||||| | ||| | || || ||||| | | |||| | ||| || | |
Sbjct 700442 ACATTGGAACAACGCCATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCAC 700501
Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTT--TGA-AATAGCTGCACAAT 26240
|| | ||| ||| | ||||||||| || || |||| ||| |||| ||||| |
Sbjct 700502 GGATGTTGTGGGCAGATACACCGATTCCTCCTGCTGATTTACTGATAATA---GCACACT 700558
Query 26241 CTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283
| | |||||| | ||||||| || |||||| |||||||
Sbjct 700559 CCTTCAATGTATCATATATTCCTTCAATACTATCATCTTTCAT 700601
>seq23
Length=2045696
Score = 91.5 bits (100), Expect = 7e-14
Identities = 152/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 26064 TACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCA 26123
||||||| || || ||||| |||||||| || || | ||||| |||||||| || ||
Sbjct 906693 TACCTTTCCTCTTGCCTCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCA 906634
Query 26124 ACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATC 26183
|||||||||| | ||| | || || ||||| | | |||| | ||| || | |
Sbjct 906633 ACATTGGAACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCAC 906574
Query 26184 TAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTG 26243
|| | |||| || | ||| ||||| ||||| |||| ||| | ||||| ||
Sbjct 906573 GGATGTTGTGAACAGATACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCT 906514
Query 26244 AAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCAT 26283
| |||||| | ||||||| || |||||| |||||||
Sbjct 906513 TCAATGTATCATATATTCCTTCAATACTATCATCTTTCAT 906474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 253010348061125
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |