Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq439 113 5e-20 seq52 111 2e-19 seq99 91.5 2e-13 seq14 84.2 3e-11 seq57 82.4 9e-11 >seq439 Length=218577 Score = 113 bits (124), Expect = 5e-20 Identities = 277/418 (66%), Gaps = 4/418 (1%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| ||||||||| | || ||||||| || | || || || || Sbjct 170806 GAGGTAGTGGAGTTTCTCAAGAAGCCTGAGAGATTCACTGCAGTAGGGGCTCGCATTCCG 170865 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | || |||||||| || ||||| || || ||| || || Sbjct 170866 AAAGGTGTTCTTCTTGTTGGACCTCCAGGTACTGGGAAGACTCTTCTGGCCAAGGCAATT 170925 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| | ||| || || || || | || | | | ||||| ||||||| Sbjct 170926 GCTGGTGAAGCGGGTGTTCCGTTTTTCTCCATT--TCAGGTTCGGAGTTTGTTGAGATGT 170983 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| |||||| | || || |||||||| | | ||| || || | Sbjct 170984 TTGTTGGTGTTGGTGCCTCTCGAGTCCGGGATCTCTTCAAGAAGGCCAAAGAGAACGCTC 171043 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTA 175528 | || ||||| || | ||||| |||||||| ||||| | |||| | | |||| | Sbjct 171044 CTTGCATTGTATTTGTGGATGAAATTGATGCTGTGGGAAGGCAAAGAGGAACTGGAATTG 171103 Query 175529 TGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCT 175588 || |||||| || |||||||| || |||| || || || || || |||||||| | Sbjct 171104 GCGGAGGAAATGATGAAAGAGAACAGACCCTTAACCAGCTTCTGACAGAAATGGATGGTT 171163 Query 175589 TTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 |||| | | |||||||| | || |||| || ||||| | | || || ||||| Sbjct 171164 TTGAGGGTAATACTGGCATCATTGTCGTTGCAGCAACTAACAGGGCAGACATTCTTGA 171221 >seq52 Length=1412070 Score = 111 bits (122), Expect = 2e-19 Identities = 279/421 (66%), Gaps = 10/421 (2%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| ||||||||| | || ||||||| || | || || || || Sbjct 1010049 GAGGTAGTGGAGTTTCTCAAGAAGCCTGAGAGATTCACTGCAGTAGGGGCTCGCATTCCA 1010108 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | || |||||||| || || || || || ||| || || Sbjct 1010109 AAAGGTGTTCTTCTTGTTGGGCCTCCAGGTACTGGGAAAACTCTTCTGGCCAAGGCAATT 1010168 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| | ||| || || || || | || | | | ||||| ||||||| Sbjct 1010169 GCTGGTGAAGCGGGTGTTCCGTTTTTCTCCATT--TCAGGTTCGGAGTTTGTTGAGATGT 1010226 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| |||||| | || || |||||||| | | ||| || ||| | Sbjct 1010227 TTGTTGGTGTTGGTGCCTCTCGAGTCCGGGATCTCTTCAAGAAGGCCAAAGAGAATGCTC 1010286 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TG 175525 | || ||||| || | ||||| |||||||| ||||| | |||| | | | || || Sbjct 1010287 CTTGCATTGTATTTGTGGATGAAATTGATGCTGTGGGAAGGCAAAGAGGAACAGGAATTG 1010346 Query 175526 GTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATG 175585 || || ||| || || ||||| || ||| | || || || || || || ||||||| Sbjct 1010347 GT---GGAGGAAACGATGAAAGAGAGCAGACACTAAACCAGCTTCTGACAGAAATGGATG 1010403 Query 175586 GCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTG 175645 | || || | | |||||||| | ||||||||||| ||||| | | ||| || || | Sbjct 1010404 GTTTCGAGGGTAATACTGGCATCATTGTTATTGCGGCAACTAACAGGGCGGACATTCTCG 1010463 Query 175646 A 175646 | Sbjct 1010464 A 1010464 >seq99 Length=845567 Score = 91.5 bits (100), Expect = 2e-13 Identities = 191/280 (68%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 175314 GCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATT 175373 |||||| || |||||||| | | || |||| | ||||| || || || || || Sbjct 697646 GCCAGGGACTGGAAAGACATTGTTGGCTAGAGCTGTGGCGGGAGAGGCAGGGGTGCCGTT 697587 Query 175374 CATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGT 175433 | | ||| | ||| | | ||||| |||||||||||||| || || || || || Sbjct 697586 CTTTTCATGCGCAGCCTCGGAGTTTGTTGAGATGTTTGTTGGAGTTGGAGCGTCGAGAGT 697527 Query 175434 TCGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGA 175492 | ||| | || || | ||| | ||| || || || ||||| || |||||||||| Sbjct 697526 GAGAGATTTGTTCGAGAAAGCCAAGTCGAAAGCACCC-TGCATTGTGTTTATTGATGAGA 697468 Query 175493 TTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGA 175550 ||||||| || || | ||| | | ||||| | | | | | |||||||||||||| Sbjct 697467 TTGATGCAGTTGGGAGGCAGAGAGGGGCTGGACTTGGAGGTGGG--AATGACGAGAGAGA 697410 Query 175551 ACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 || || |||||||| | | ||||| |||||||| ||| Sbjct 697409 GCAGACTATTAATCAGTTGTTGACCGAAATGGATGGGTTT 697370 >seq14 Length=2767599 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 75128 CGGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGC-TATCTTCAACG 75186 ||||||| ||| | || ||||||||| |||| || ||||| |||| | || || | Sbjct 700991 CGGGACTTTGACTATGATTACTTTGGCTTCAAGACGCTTGA-AAGATCCTACCTCCTGAA 700933 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | |||||| || ||| ||||| | ||| |||| || | || || Sbjct 700932 GGTCCAAGGAAAGGTTGTGGAAAGGCCTCAGCACATGCTGATGAGGGTTGCTGTTGGAAT 700873 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| || || |||||||| | | | || ||| | |||||| || | ||| Sbjct 700872 TCACAAAGATGATATTGATTCAGCTATCAAAACGTACCATTTGATGTCTCAGCGATGGTT 700813 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || ||| || | || ||||| ||||||||||| ||||||||||| || Sbjct 700812 CACTCATGCTTCTCCCACCCTTTTCAATGCTGGAACACCAAGACCTCA 700765 >seq57 Length=1296831 Score = 82.4 bits (90), Expect = 9e-11 Identities = 150/218 (69%), Gaps = 14/218 (6%) Strand=Plus/Minus Query 175380 GTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGA 175439 |||| | ||| | | ||||| ||| |||||||||| || || || ||| || | || Sbjct 699971 GTGCGCAGCCTCGGAGTTTGTTGAGTTGTTTGTTGGAGTCGGGGCGTCAAGAGTGAGAGA 699912 Query 175440 TCTCTTTGAAATCGCCCGCGAAAATCAA-----CCATGTATTGTCTTCATTGATGAGATT 175494 | | ||||| | || ||| |||| || || |||||||| |||||||| ||| Sbjct 699911 TTTGTTTGAGAAAGC-----AAAGTCAAAAGCGCCCTGCATTGTCTTTATTGATGAAATT 699857 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAAC 175552 |||||||| || | ||| | | ||||| | | | | | ||||| |||||||| | Sbjct 699856 GATGCGGTTGGGAGGCAGAGAGGGGCTGGACTAGGAGG--GGGGAATGATGAGAGAGAGC 699799 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 | || |||||||| | | || || |||||||| ||| Sbjct 699798 AGACTATTAATCAGTTGTTGACTGAAATGGATGGATTT 699761 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596497899791200