Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq9615 576 4e-160 seq223 576 4e-160 seq218 224 3e-54 seq421 183 9e-42 >seq9615 Length=156766 Score = 576 bits (638), Expect = 4e-160 Identities = 733/1006 (73%), Gaps = 2/1006 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||| ||| | || ||| | |||||||||||| |||| |||||| Sbjct 1340 TGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTT 1281 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| |||||||||| | | | | || || | ||| |||||| |||||||||| Sbjct 1280 GGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCAT 1222 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| || || Sbjct 1221 TGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 1162 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| ||||| ||||||||| | | |||| | || || || | || || Sbjct 1161 TGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTT 1102 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| || |||| |||||| | ||||| ||||| |||||| | Sbjct 1101 TTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGA 1042 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 ||| | || | |||||| | | ||| | | |||| |||| || || |||||||| Sbjct 1041 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACT 982 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 981 GAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGC 922 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || ||||| || ||| | | |||||| | || ||||| |||||| ||||| ||||| Sbjct 921 GGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCC 862 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| || ||||| ||| | || ||||||||||| || ||||| || Sbjct 861 TCTAGGAATCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCT 802 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || || || ||| | || || || || ||||| || || || | ||| || Sbjct 801 TATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGC 742 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | | || |||||| | | | | ||||| || ||||| ||| Sbjct 741 TATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 682 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| | || |||| || ||||||||||| || |||||||| || || || || ||||| Sbjct 681 TAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGG 622 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTT 43058 ||| ||||| || | |||||||||||||| ||||| || ||||||||| || || Sbjct 621 TTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGCTCTTTACATTT 562 Query 43059 CTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTAT 43118 ||| | || |||||||| || || || || ||||||||| || | || | || ||||| Sbjct 561 CTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTAT 502 Query 43119 GGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGT 43178 ||| || || | |||||||| || || |||||||| | ||||||| ||| || ||| Sbjct 501 GGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT 442 Query 43179 CATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGA 43238 || ||| |||||||||||| | || ||||| |||||||| | || || ||||| || Sbjct 441 AATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGA 382 Query 43239 GCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGGTT 43284 || ||||| ||||| ||||| || || || || | || || ||| Sbjct 381 ACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCTGTCGAAGTT 336 >seq223 Length=428319 Score = 576 bits (638), Expect = 4e-160 Identities = 733/1006 (73%), Gaps = 2/1006 (0%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||| ||| | || ||| | |||||||||||| |||| |||||| Sbjct 58726 TGGGGTCGCTTCTGTAATTGGATAACCAGCACTGAAAACCGTCTTTATATTGGATGGTTT 58785 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGCTTTCAT 42398 ||||| |||||||||| | | | | || || | ||| |||||| |||||||||| Sbjct 58786 GGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCAT 58844 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||||||||| |||||||||||||| |||||||||||||| ||||| ||||| || || Sbjct 58845 TGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTA 58904 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 ||| ||||| ||||| ||||||||| | | |||| | || || || | || || Sbjct 58905 TGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGGTTGCACTT 58964 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | || |||||||| || |||| |||||| | ||||| ||||| |||||| | Sbjct 58965 TTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGCGGTCCTTATGA 59024 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 ||| | || | |||||| | | ||| | | |||| |||| || || |||||||| Sbjct 59025 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGTGAGTGGGAACT 59084 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 59085 GAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCGGC 59144 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 || ||||| || ||| | | |||||| | || ||||| |||||| ||||| ||||| Sbjct 59145 GGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCGGATGGGATGCC 59204 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| || ||||| ||| | || ||||||||||| || ||||| || Sbjct 59205 TCTAGGAATCTCTGGTACTTTTAACTTTATGATTGTATTCCAGGCTGAGCACAACATCCT 59264 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || || || ||| | || || || || ||||| || || || | ||| || Sbjct 59265 TATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGC 59324 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | | || |||||| | | | | ||||| || ||||| ||| Sbjct 59325 TATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 59384 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| | || |||| || ||||||||||| || |||||||| || || || || ||||| Sbjct 59385 TAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATCGTAGCCGCTCATGG 59444 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTT 43058 ||| ||||| || | |||||||||||||| ||||| || ||||||||| || || Sbjct 59445 TTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGCTCTTTACATTT 59504 Query 43059 CTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTAT 43118 ||| | || |||||||| || || || || ||||||||| || | || | || ||||| Sbjct 59505 CTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACTAT 59564 Query 43119 GGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGT 43178 ||| || || | |||||||| || || |||||||| | ||||||| ||| || ||| Sbjct 59565 GGCTTTCAATCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGT 59624 Query 43179 CATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGA 43238 || ||| |||||||||||| | || ||||| |||||||| | || || ||||| || Sbjct 59625 AATTAATACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGA 59684 Query 43239 GCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGGTT 43284 || ||||| ||||| ||||| || || || || | || || ||| Sbjct 59685 ACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCTGTCGAAGTT 59730 Score = 89.7 bits (98), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 43142 ACTTT-AACCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATT 43200 ||||| |||||||| | ||||||| ||| || ||| || ||| |||||||||||| Sbjct 93460 ACTTTCAACCAATCTGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATT 93519 Query 43201 TTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCG 43260 | || ||||| |||||||| | || || ||||| || || ||||| ||||| ||||| Sbjct 93520 ATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAATTTCCCT 93579 Query 43261 CTTGATCTTGCATCCGTGGAGGTT 43284 || || || || | || || ||| Sbjct 93580 CTAGACCTAGCTGCTGTCGAAGTT 93603 >seq218 Length=447883 Score = 224 bits (248), Expect = 3e-54 Identities = 358/509 (70%), Gaps = 20/509 (4%) Strand=Plus/Minus Query 42329 TTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATT 42387 |||| ||||||||||| |||||||||| | | | | || || | ||| |||||| Sbjct 92964 TTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTC-TGTATTTATT 92906 Query 42388 GTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGC 42447 |||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||| Sbjct 92905 ATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTCTTTCTGG- 92847 Query 42448 TCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATT 42507 | | ||||| ||||| ||||| ||||||||| | | |||| | || || Sbjct 92846 -ATTAAATTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATA 92788 Query 42508 GGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGC 42567 || | || || || | || |||||||| || |||| |||||| | ||||| ||| Sbjct 92787 GGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGC 92728 Query 42568 GGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGC 42627 || |||||| |||| | || | |||||| | | ||| | | |||| |||| || Sbjct 92727 GGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGT 92668 Query 42628 GAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCC 42687 || |||||||| | ||| || || ||| | || ||||| |||||| || || || Sbjct 92667 GAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 92608 Query 42688 CCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCA 42747 ||||| || || || ||||| || ||| | | |||||| | || ||||| |||||| Sbjct 92607 CCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCG 92548 Query 42748 GATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAA 42807 ||||| || || || ||||| || ||||| ||| ||||||||||| Sbjct 92547 GATGG------TC----CA-GTCTGGTACTTTGAACTTTATG-----ATTCCAGGCTGAG 92504 Query 42808 CATAACATTCTTATGCATCCTTTCCATAT 42836 || ||||| |||||||| || || || || Sbjct 92503 CACAACATCCTTATGCACCCATTTCACAT 92475 Score = 224 bits (248), Expect = 3e-54 Identities = 358/509 (70%), Gaps = 20/509 (4%) Strand=Plus/Minus Query 42329 TTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATT 42387 |||| ||||||||||| |||||||||| | | | | || || | ||| |||||| Sbjct 367027 TTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTC-TGTATTTATT 366969 Query 42388 GTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGC 42447 |||||||||||||||||||||| |||||||||||||| |||||||||||| | ||||| Sbjct 366968 ATCGCTTTCATTGCTGCCCCTCCAGTAGACATTGATGGTATTCGTGAACCTCTTTCTGG- 366910 Query 42448 TCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATT 42507 | | ||||| ||||| ||||| ||||||||| | | |||| | || || Sbjct 366909 -ATTAAATTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATA 366851 Query 42508 GGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGC 42567 || | || || || | || |||||||| || |||| |||||| | ||||| ||| Sbjct 366850 GGGTTGCACTTTTACCCAATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAACGGC 366791 Query 42568 GGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGC 42627 || |||||| |||| | || | |||||| | | ||| | | |||| |||| || Sbjct 366790 GGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGGCGT 366731 Query 42628 GAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCC 42687 || |||||||| | ||| || || ||| | || ||||| |||||| || || || Sbjct 366730 GAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 366671 Query 42688 CCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCA 42747 ||||| || || || ||||| || ||| | | |||||| | || ||||| |||||| Sbjct 366670 CCTGTTGCGGCGGCTACTGCTGTTTTCTTGATTTATCCAATCGGTCAAGGAAGTTTTTCG 366611 Query 42748 GATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAA 42807 ||||| || || || ||||| || ||||| ||| ||||||||||| Sbjct 366610 GATGG------TC----CA-GTCTGGTACTTTGAACTTTATG-----ATTCCAGGCTGAG 366567 Query 42808 CATAACATTCTTATGCATCCTTTCCATAT 42836 || ||||| |||||||| || || || || Sbjct 366566 CACAACATCCTTATGCACCCATTTCACAT 366538 >seq421 Length=230418 Score = 183 bits (202), Expect = 9e-42 Identities = 284/406 (70%), Gaps = 0/406 (0%) Strand=Plus/Minus Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | | || |||||| | | | | ||||| || ||||| ||| Sbjct 19621 TATGCATGGTTCTTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 19562 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| | || |||| || ||||||||||| | |||||||| || | || | ||||| Sbjct 19561 TAATGAAGGTTACAGATTTGGTCAAGAGGAAAAAACTTATAATATCATAGCCACTCATGG 19502 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACTT 43058 ||| ||||| | | |||||||||||||| ||||| || ||||||||| || || Sbjct 19501 TTATTTTGGTCAATTGATCTTCCAATATGCTAGTTTTAACAACTCTCGCTCTTTACATTT 19442 Query 43059 CTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTAT 43118 ||| | || |||||||| || || || || | ||||| | || | || | || ||||| Sbjct 19441 CTTCTTAGCTGCTTGGCCTGTAGTAGGTATCTAGTTCATTGCTTTAGGTATTAGCACTAT 19382 Query 43119 GGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGT 43178 || || || | |||||||| | || ||||||| | ||||||| ||| | ||| Sbjct 19381 AGCTTTCAATCTAAATGGTTTCGATTTCAACCAATTTGTAGTTGATAGTCAAGGTTGTGT 19322 Query 43179 CATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGA 43238 || ||| |||||||||||| | || |||| |||||||| | || | ||||| || Sbjct 19321 AATTAATACCTGGGCTGATATTATTAACTGTGCTAACCTTGGTATGGAAATTATGCATGA 19262 Query 43239 GCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGGTT 43284 || ||||| ||||| ||||| || || || || | || || ||| Sbjct 19261 ACGTAATGCTCATAATTTCCCTCTAGACCTAGCTGCTGTCGAAGTT 19216 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143516411694020