Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq9615 486 6e-133 seq223 486 6e-133 seq218 179 1e-40 seq421 158 4e-34 seq770 80.6 8e-11 >seq9615 Length=156766 Score = 486 bits (538), Expect = 6e-133 Identities = 702/985 (71%), Gaps = 4/985 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || || |||||||||||||| || ||||||||||| | || |||||| Sbjct 349 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 408 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 409 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 468 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || ||||||||||| || || ||||| |||| ||||| | || || | | Sbjct 469 TGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 528 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | |||||||| | ||| || ||| |||||| Sbjct 529 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAGCGAGAGTTGTTAAAA 588 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || || || || |||||||| || Sbjct 589 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 648 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| ||||| | || || | ||| || | | ||||| ||||| Sbjct 649 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 708 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | || || |||||| || ||||||||| ||| || | || ||||| || Sbjct 709 ATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 768 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || ||| || ||||||||||| || || || || || || |||||||| Sbjct 769 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 828 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | |||||||||||||||||||||||| || |||||||| ||||| |||||| ||||| Sbjct 829 ATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTCCTTGA 888 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 |||| ||||||| ||||| || || ||| || | | || |||| |||||||||| Sbjct 889 CCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACA 948 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || | | || |||||||||| | ||| || Sbjct 949 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGCCCCATGTAACAA 1008 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| || | ||| || ||||| ||||||| ||| Sbjct 1009 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCAT 1068 Query 26597 TCGTCCA-GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||| |||||||| || |||||||| || | || || || ||| | Sbjct 1069 TCATCAACGGATGCC-GCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGT 1127 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || ||||||||||| || | || || || ||||| || || Sbjct 1128 AGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTC 1187 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| || ||||| || || || || ||||| || | ||||| ||| | || Sbjct 1188 ACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAG 1246 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | ||| || ||||| | || || |||||||| | ||| |||||||| | Sbjct 1247 TTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGGTTTT 1306 Query 26835 CAGTACTTGTAACCCACTCACAAAA 26859 |||| || || | ||| | ||| || Sbjct 1307 CAGTGCTGGTTATCCAATTACAGAA 1331 >seq223 Length=428319 Score = 486 bits (538), Expect = 6e-133 Identities = 702/985 (71%), Gaps = 4/985 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || || |||||||||||||| || ||||||||||| | || |||||| Sbjct 59717 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 59658 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 59657 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 59598 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || ||||||||||| || || ||||| |||| ||||| | || || | | Sbjct 59597 TGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAGTGAAC 59538 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || || ||||||| ||| | |||||||| | ||| || ||| |||||| Sbjct 59537 CAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAGCGAGAGTTGTTAAAA 59478 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || |||| ||||| || || || || || || |||||||| || Sbjct 59477 CTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTATAAGTT 59418 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| ||||| ||||| | || || | ||| || | | ||||| ||||| Sbjct 59417 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 59358 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | || || |||||| || ||||||||| ||| || | || ||||| || Sbjct 59357 ATCAAACTAGAGGTTACCAAAGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 59298 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| || || ||| || ||||||||||| || || || || || || |||||||| Sbjct 59297 CCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACA 59238 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | |||||||||||||||||||||||| || |||||||| ||||| |||||| ||||| Sbjct 59237 ATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAACTTCCTTGA 59178 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 |||| ||||||| ||||| || || ||| || | | || |||| |||||||||| Sbjct 59177 CCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACA 59118 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || | | || |||||||||| | ||| || Sbjct 59117 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGCCCCATGTAACAA 59058 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| || | ||| || ||||| ||||||| ||| Sbjct 59057 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCAT 58998 Query 26597 TCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||| |||||||| || |||||||| || | || || || ||| | Sbjct 58997 TCATCAACGGATGCC-GCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGT 58939 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || || || || ||||||||||| || | || || || ||||| || || Sbjct 58938 AGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGTTC 58879 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| || ||||| || || || || ||||| || | ||||| ||| | || Sbjct 58878 ACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAG 58820 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | ||| || ||||| | || || |||||||| | ||| |||||||| | Sbjct 58819 TTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAGACGGTTTT 58760 Query 26835 CAGTACTTGTAACCCACTCACAAAA 26859 |||| || || | ||| | ||| || Sbjct 58759 CAGTGCTGGTTATCCAATTACAGAA 58735 Score = 84.2 bits (92), Expect = 6e-12 Identities = 98/131 (75%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || || |||||||||||||| || ||||||||||| | || |||||| Sbjct 93590 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 93531 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 93530 GCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACAGAT 93471 Query 25997 TGGTT-AAAGT 26006 ||||| ||||| Sbjct 93470 TGGTTGAAAGT 93460 >seq218 Length=447883 Score = 179 bits (198), Expect = 1e-40 Identities = 348/508 (69%), Gaps = 22/508 (4%) Strand=Plus/Plus Query 26312 ATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAA 26371 || || ||||||||||| || || || || || || |||||| ||||||||| ||| Sbjct 92475 ATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT-----CATAAAGTTCAAA 92529 Query 26372 GTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACT 26431 |||||||| | || ||||| |||||| ||||| |||| ||||||| Sbjct 92530 GTACCAGA-----CTGGA------CCATCCGAAAAACTTCCTTGACCGATTGGATAAATC 92578 Query 26432 AAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTC 26491 ||||| || || ||| || | | || |||| |||||||||| ||||| || | | Sbjct 92579 AAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGC 92638 Query 26492 ATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAG 26551 || || || | | || |||||||||| | ||| || ||||| || | |||| Sbjct 92639 ATACCCAGACGGAAACTCAGTTCCCACTCACGCCCCATGTAACAAGCTACACCAAGTAAG 92698 Query 26552 AAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTG-TGCC 26610 ||||| | | ||| || | ||| || ||||| ||||||| ||| || || | | |||| Sbjct 92699 AAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGCC 92758 Query 26611 AGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCC 26670 |||||||| || |||||||| || | || || || ||| | || | | || || Sbjct 92759 -GCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGTAGGAATAATGGCACC 92817 Query 26671 TGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTAT 26730 || || ||||||||||| || ||| | | || |||| || ||||| || ||||| || Sbjct 92818 AGAAATGATATTGTTTCCATAAATTTA--ATCCAGAAAGAGGTTCACGAATACCATCAAT 92875 Query 26731 ATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGC 26789 ||||| || || || || ||||| || | ||||| ||| | ||| || | | ||| Sbjct 92876 GTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAAG 92934 Query 26790 AGGGTATCATAAGCACCCCGAACCATCC 26817 || ||||| | || || |||||||| Sbjct 92935 TAGGAATCATCAAAACACCAAACCATCC 92962 Score = 179 bits (198), Expect = 1e-40 Identities = 348/508 (69%), Gaps = 22/508 (4%) Strand=Plus/Plus Query 26312 ATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAA 26371 || || ||||||||||| || || || || || || |||||| ||||||||| ||| Sbjct 366538 ATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT-----CATAAAGTTCAAA 366592 Query 26372 GTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACT 26431 |||||||| | || ||||| |||||| ||||| |||| ||||||| Sbjct 366593 GTACCAGA-----CTGGA------CCATCCGAAAAACTTCCTTGACCGATTGGATAAATC 366641 Query 26432 AAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTC 26491 ||||| || || ||| || | | || |||| |||||||||| ||||| || | | Sbjct 366642 AAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGC 366701 Query 26492 ATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAG 26551 || || || | | || |||||||||| | ||| || ||||| || | |||| Sbjct 366702 ATACCCAGACGGAAACTCAGTTCCCACTCACGCCCCATGTAACAAGCTACACCAAGTAAG 366761 Query 26552 AAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTG-TGCC 26610 ||||| | | ||| || | ||| || ||||| ||||||| ||| || || | | |||| Sbjct 366762 AAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACGGATGCC 366821 Query 26611 AGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCC 26670 |||||||| || |||||||| || | || || || ||| | || | | || || Sbjct 366822 -GCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGTAGGAATAATGGCACC 366880 Query 26671 TGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTAT 26730 || || ||||||||||| || ||| | | || |||| || ||||| || ||||| || Sbjct 366881 AGAAATGATATTGTTTCCATAAATTTA--ATCCAGAAAGAGGTTCACGAATACCATCAAT 366938 Query 26731 ATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGC 26789 ||||| || || || || ||||| || | ||||| ||| | ||| || | | ||| Sbjct 366939 GTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAAG 366997 Query 26790 AGGGTATCATAAGCACCCCGAACCATCC 26817 || ||||| | || || |||||||| Sbjct 366998 TAGGAATCATCAAAACACCAAACCATCC 367025 >seq421 Length=230418 Score = 158 bits (174), Expect = 4e-34 Identities = 225/317 (71%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || || |||||||||||||| || ||||||| ||| | || |||||| Sbjct 19229 GCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAATTTCCATACCAAGGTTA 19288 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || | ||| | | ||||||||| ||| |||| || | | ||| ||||| | Sbjct 19289 GCACAGTTAATAATATCAGCCCAGGTATTAATTACACAACCTTGACTATCAACTACAAAT 19348 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || | ||||||||||| || || || || |||| ||||| | || | | | Sbjct 19349 TGGTTGAAATCGAAACCATTTAGATTGAAAGCTATAGTGCTAATACCTAAAGCAATGAAC 19408 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 | || || || || ||||||| ||| | |||||||| | ||| || ||| |||||| Sbjct 19409 TAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAGCGAGAGTTGTTAAAA 19468 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || || || ||| ||||| || || || | || | |||||||| || Sbjct 19469 CTAGCATATTGGAAGATCAATTGACCAAAATAACCATGAGTGGCTATGATATTATAAGTT 19528 Query 26177 TCTTCATCTTGCCCAAA 26193 | ||| ||||| ||||| Sbjct 19529 TTTTCCTCTTGACCAAA 19545 >seq770 Length=117654 Score = 80.6 bits (88), Expect = 8e-11 Identities = 114/159 (72%), Gaps = 1/159 (1%) Strand=Plus/Minus Query 25878 CTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTAG 25937 ||| ||| || | || |||||||||||| | || |||| |||||| | || ||||||| Sbjct 42840 CTAGGTCTAGAGAGAAATTATGAGCATTATGTTCATGCA-AACTTCCATACCAAGGTTAG 42782 Query 25938 CTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGACT 25997 | ||||| | | |||||| || ||| |||| || | | ||| |||| || | Sbjct 42781 CACGGTTAATAATATCAGCACAGGTATTAATTACACAACCTTGACTATCAACTATAGATT 42722 Query 25998 GGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGC 26036 ||| || || ||||||||||| || || ||||| |||| Sbjct 42721 AGTTGAAATTGAAACCATTTAGATTGAAAGCCATGGTGC 42683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147695134520800