Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq9615 448 1e-121 seq223 448 1e-121 seq218 197 4e-46 >seq9615 Length=156766 Score = 448 bits (496), Expect = 1e-121 Identities = 700/993 (70%), Gaps = 10/993 (1%) Strand=Plus/Plus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||| ||||| ||||||||| || || ||||| ||||| || ||||| ||||||||||| | Sbjct 344 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 403 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | ||||| || ||||||||| ||| ||| || ||| | | || |||| Sbjct 404 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 463 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || |||||||| || || ||||||||||| ||||| | | | Sbjct 464 CAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAG 523 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | | ||| || || | || || ||||| | | ||||| |||| | || |||| Sbjct 524 TGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAGCGAGAGTTGT 583 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 | || ||||||||| || || | || ||||| ||||| || || |||||||| |||| Sbjct 584 TAAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 643 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 |||| || | || |||||||| | || || | || |||||| |||| ||||| | Sbjct 644 AAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 703 Query 40888 CCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCAC 40944 ||| || | | |||| || ||| | || ||||||||| || | | || | Sbjct 704 CCCTGATCAAACTAGAGGT--TACCAAAGAA-CCATGCATAGCACTGAATAGGGAGCCGC 760 Query 40945 CAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTT 41004 | || || || || ||||| | ||| || ||||||||||| || |||||||| || || | Sbjct 761 CGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCT 820 Query 41005 GGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAG 41064 |||| |||| ||| ||||| || || ||| |||||||| |||||| ||||| || ||| Sbjct 821 GGAATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAAC 880 Query 41065 AACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGT 41124 || ||||||| |||||||| ||||| ||||| ||| || | | ||||||| | Sbjct 881 TTCCTTGACCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAAT 940 Query 41125 ATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAG 41184 |||| ||| ||||| || | |||||| || | | | |||||||||| | || Sbjct 941 ATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGCCCCA 1000 Query 41185 CGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGT 41244 ||| ||||| || | ||| ||||| | ||||| || | ||| || |||||||||| Sbjct 1001 TGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGT 1060 Query 41245 ATAGCCACTCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCG 41303 ||| ||| || || | | |||| |||||||| |||||||| || || | || || || Sbjct 1061 ATAACCATTCATCAACGGATGCC-GCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCC 1119 Query 41304 TTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAA 41363 ||| | |||| | || ||||| || |||||||| || || | || || || ||| Sbjct 1120 GCAGAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAA 1179 Query 41364 ACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA- 41422 || || ||||| || ||||| || ||||| || || || || || || ||||| || || Sbjct 1180 ACAGGTTCACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAAT 1239 Query 41423 ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAG 41482 ||| | || || || | ||| | |||||||| | ||||||||||| || | || || Sbjct 1240 ACA-GAAGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAG 1298 Query 41483 GCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| || ||||| || | ||| ||||| || Sbjct 1299 ACGGTTTTCAGTGCTGGTTATCCAATTACAGAA 1331 >seq223 Length=428319 Score = 448 bits (496), Expect = 1e-121 Identities = 700/993 (70%), Gaps = 10/993 (1%) Strand=Plus/Minus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||| ||||| ||||||||| || || ||||| ||||| || ||||| ||||||||||| | Sbjct 59722 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 59663 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | ||||| || ||||||||| ||| ||| || ||| | | || |||| Sbjct 59662 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 59603 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || |||||||| || || ||||||||||| ||||| | | | Sbjct 59602 CAGATTGGTTGAAATTGAAACCATTTAGATTGAAAGCCATAGTGCTAATACCTAAAGCAG 59543 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGT 40767 | | ||| || || | || || ||||| | | ||||| |||| | || |||| Sbjct 59542 TGAACCAGATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAGCGAGAGTTGT 59483 Query 40768 TGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTAT 40827 | || ||||||||| || || | || ||||| ||||| || || |||||||| |||| Sbjct 59482 TAAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCGGCTACGATATTAT 59423 Query 40828 AAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTCT 40887 |||| || | || |||||||| | || || | || |||||| |||| ||||| | Sbjct 59422 AAGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTT 59363 Query 40888 CCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCAC 40944 ||| || | | |||| || ||| | || ||||||||| || | | || | Sbjct 59362 CCCTGATCAAACTAGAGGT--TACCAAAGAA-CCATGCATAGCACTGAATAGGGAGCCGC 59306 Query 40945 CAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTT 41004 | || || || || ||||| | ||| || ||||||||||| || |||||||| || || | Sbjct 59305 CGAATACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCT 59246 Query 41005 GGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAG 41064 |||| |||| ||| ||||| || || ||| |||||||| |||||| ||||| || ||| Sbjct 59245 GGAATACAATCATAAAGTTAAAAGTACCAGAGATTCCTAGAGGCATCCCATCCGAAAAAC 59186 Query 41065 AACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGT 41124 || ||||||| |||||||| ||||| ||||| ||| || | | ||||||| | Sbjct 59185 TTCCTTGACCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAAT 59126 Query 41125 ATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAG 41184 |||| ||| ||||| || | |||||| || | | | |||||||||| | || Sbjct 59125 ATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGCCCCA 59066 Query 41185 CGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGT 41244 ||| ||||| || | ||| ||||| | ||||| || | ||| || |||||||||| Sbjct 59065 TGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGT 59006 Query 41245 ATAGCCACTCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCG 41303 ||| ||| || || | | ||||| ||||||| |||||||| || || | || || || Sbjct 59005 ATAACCATTCATCAACGGATGCCG-CTTCCCATATTGGGTAAAAGTGCAACCCTATAGCC 58947 Query 41304 TTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAA 41363 ||| | |||| | || ||||| || |||||||| || || | || || || ||| Sbjct 58946 GCAGAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAA 58887 Query 41364 ACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA- 41422 || || ||||| || ||||| || ||||| || || || || || || ||||| || || Sbjct 58886 ACAGGTTCACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAAT 58827 Query 41423 ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAG 41482 ||| | || || || | ||| | |||||||| | ||||||||||| || | || || Sbjct 58826 ACA-GAAGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATATAAAG 58768 Query 41483 GCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| || ||||| || | ||| ||||| || Sbjct 58767 ACGGTTTTCAGTGCTGGTTATCCAATTACAGAA 58735 Score = 84.2 bits (92), Expect = 6e-12 Identities = 101/136 (74%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 40528 CAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTA 40587 ||| ||||| ||||||||| || || ||||| ||||| || ||||| ||||||||||| | Sbjct 93595 CAGCAGCTAGGTCTAGAGGGAAATTATGAGCATTACGTTCATGCATAACTTCCATACCAA 93536 Query 40588 GACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTA 40647 | | | ||||| || ||||||||| ||| ||| || ||| | | || |||| Sbjct 93535 GGTTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTA 93476 Query 40648 CTGACTGGTT-AAAGT 40662 | || ||||| ||||| Sbjct 93475 CAGATTGGTTGAAAGT 93460 >seq218 Length=447883 Score = 197 bits (218), Expect = 4e-46 Identities = 362/523 (69%), Gaps = 22/523 (4%) Strand=Plus/Plus Query 40953 CCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACA 41012 || || ||||| | || || ||||||||||| || |||||||| || || ||||| Sbjct 92460 CCAGCTACGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT--- 92516 Query 41013 AACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGA 41072 ||| ||||| || || ||| || | || |||||| || ||| || ||| Sbjct 92517 --CATAAAGTTCAAAGTACCA--GACT------GG---ACCATCCGAAAAACTTCCTTGA 92563 Query 41073 CCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACA 41132 |||| |||||||| ||||| ||||| ||| || | | ||||||| ||||| ||| Sbjct 92564 CCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACA 92623 Query 41133 AATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCT 41192 ||||| || | |||||| || | | | |||||||||| | || ||| Sbjct 92624 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGCCCCATGTAACAA 92683 Query 41193 GCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCAC 41252 ||||| || | ||| ||||| | ||||| || | ||| || ||||||||||||| ||| Sbjct 92684 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCAT 92743 Query 41253 TCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCT 41311 || || | | |||| |||||||| |||||||| || || | || || || ||| | Sbjct 92744 TCATCAACGGATGCC-GCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGT 92802 Query 41312 CGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTC 41371 |||| | || ||||| || |||||||| || || ||| | | || |||| || || Sbjct 92803 AGGAATAATGGCACCAGAAATGATATTGTTTCCATAAATTTA--ATCCAGAAAGAGGTTC 92860 Query 41372 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGG 41430 ||| || ||||| || ||||| || || || || || || ||||| || || ||| | | Sbjct 92861 ACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAG 92919 Query 41431 TAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACC 41473 | || || | ||| | |||||||| | ||||||||||| || Sbjct 92920 TTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCC 92962 Score = 197 bits (218), Expect = 4e-46 Identities = 362/523 (69%), Gaps = 22/523 (4%) Strand=Plus/Plus Query 40953 CCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACA 41012 || || ||||| | || || ||||||||||| || |||||||| || || ||||| Sbjct 366523 CCAGCTACGCCTAAGATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT--- 366579 Query 41013 AACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGA 41072 ||| ||||| || || ||| || | || |||||| || ||| || ||| Sbjct 366580 --CATAAAGTTCAAAGTACCA--GACT------GG---ACCATCCGAAAAACTTCCTTGA 366626 Query 41073 CCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACA 41132 |||| |||||||| ||||| ||||| ||| || | | ||||||| ||||| ||| Sbjct 366627 CCGATTGGATAAATCAAGAAAACAGCAGTAGCCGCCGCAACAGGAGCTGAATATGCAACA 366686 Query 41133 AATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCT 41192 ||||| || | |||||| || | | | |||||||||| | || ||| Sbjct 366687 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGCCCCATGTAACAA 366746 Query 41193 GCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCAC 41252 ||||| || | ||| ||||| | ||||| || | ||| || ||||||||||||| ||| Sbjct 366747 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCGTTGTATAACCAT 366806 Query 41253 TCGTCCA-GTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCT 41311 || || | | |||| |||||||| |||||||| || || | || || || ||| | Sbjct 366807 TCATCAACGGATGCC-GCTTCCCATATTGGGTAAAAGTGCAACCCTATAGCCGCAGAAGT 366865 Query 41312 CGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTC 41371 |||| | || ||||| || |||||||| || || ||| | | || |||| || || Sbjct 366866 AGGAATAATGGCACCAGAAATGATATTGTTTCCATAAATTTA--ATCCAGAAAGAGGTTC 366923 Query 41372 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGG 41430 ||| || ||||| || ||||| || || || || || || ||||| || || ||| | | Sbjct 366924 ACGAATACCATCAATGTCTACTGGAGGGGCAGCAATGAAAGCGATAATAAATACA-GAAG 366982 Query 41431 TAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACC 41473 | || || | ||| | |||||||| | ||||||||||| || Sbjct 366983 TTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCC 367025 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143685992329410