Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq189 158 2e-33 seq311 111 3e-19 seq1471 105 1e-17 seq137 105 1e-17 seq26 104 4e-17 seq78 95.1 2e-14 seq185 91.5 3e-13 seq461 84.2 4e-11 >seq189 Length=529659 Score = 158 bits (174), Expect = 2e-33 Identities = 144/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 |||||||| || | | || ||| ||| ||||||||||| || |||||||||| ||| Sbjct 461484 ATATTATAATCCGCAAGGGTCCTACCATCCTCTAATTGTTTCCCAGCAAAAATTAGCCTC 461425 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 |||||||| ||||| || |||||||| ||||| || |||| |||| || ||||||| Sbjct 461424 TGTTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTTGGCCTTTACGTTGTCAATAGTA 461365 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 |||||| ||| ||||| |||||||| ||||| || ||||| ||||| || || |||||| Sbjct 461364 TCGGAACTCTCGACTTCAAGAGTTATGGTTTTGCCGGTTAGGGTTTTGACGAAGATTTGC 461305 Query 193359 AT 193360 || Sbjct 461304 AT 461303 Score = 109 bits (120), Expect = 1e-18 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||| || || ||||| | | || ||||||||||| || |||||||| Sbjct 461229 TCCTCGAGTTGTTTGCCAGCGAAAATCAGGCGTTGCTGATCAGGAGGGATACCTTCTTTG 461170 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| ||||||| ||| | || || ||||| ||| ||| ||||| |||||||| Sbjct 461169 TCTTGGATTTTGGCTTTGACGTTGTCGATTGTATCAGAACTCTCGACTTCAAGAGTTATG 461110 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||| || ||||| || || || ||||| Sbjct 461109 GTTTTGCCTGTCAGGGTTTTCACGAAGATCTGCAT 461075 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || |||||||| || ||||||||||||| |||| ||| || ||| ||||| || Sbjct 461760 ATCCCGCCTCTCAAACGCAGTACCAGATGCAGAGTAGACTCCTTTTGAATGTTATAATCC 461701 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || || || || || || || ||||| || | ||||| ||||| || Sbjct 461700 GCAAGAGTCCTCCCCTCTTCCAACTGCTTCCCTGCAAAGATGAGCCTCTGCTGATCCGGG 461641 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || |||| ||| | || ||| ||||| || ||| Sbjct 461640 GGAATCCCTTCCTTGTCCTGAATCTTGGCTTTAACGTTATCAATTGTATCAGAGCTTTCA 461581 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || |||| || || || || |||||||| Sbjct 461580 ACCTCAAGCGTGATTGTCTTTCCAGTTAAAGTCTTAACGAAGATTTGCAT 461531 >seq311 Length=316158 Score = 111 bits (122), Expect = 3e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| || || ||||| || || ||||| |||||||| || || ||||| || Sbjct 207038 ATCCTCCAATTGCTTCCCAGCAAAGATAAACCTCTGCTGATCAGGTGGAATACCTTCCTT 207097 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || |||||||| | || || ||||| || ||| || || || || || Sbjct 207098 ATCTTGAATCTTGGTTTTCAAGTTGTCTATTGTATCAGAGCTCTCGACCTCAAGGGTAAT 207157 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || |||||||||||||| Sbjct 207158 TGTCTTTCCTGTTAGGGTCTTGACAAATATTTGCAT 207193 Score = 93.3 bits (102), Expect = 8e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | |||||| || ||||| || | |||||||||||||| || ||||| || Sbjct 215728 ATCCTCGAGTTGTTTGCCATAAAAAAATATGCGATGTTGATCAGGAGGGATGCCTTCCTT 215787 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| |||||| ||| | || || ||||| || ||| ||||| |||||||| Sbjct 215788 GTCTTGAATTTTGACTTTGACGTTGTTGATTGTATCATAACTCTCGACTTCGAGAGTTAT 215847 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| ||||||| ||||| | || || ||||| Sbjct 215848 GGTTTTTCCTGTTAAGGTTTTCATGAAGATCTGCAT 215883 >seq1471 Length=47346 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| | || ||||| || || ||||| |||||||| || || ||||| || Sbjct 5452 ATCCTCCAATTGCTCCCCAGCAAAGATAAACCTCTGCTGATCAGGTGGAATACCTTCCTT 5511 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || |||||||| | || || ||||| || ||| || || || || || Sbjct 5512 ATCTTGAATCTTGGTTTTCAAGTTGTCTATTGTATCAGAGCTCTCGACCTCAAGGGTAAT 5571 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || |||||||||||||| Sbjct 5572 TGTCTTTCCTGTTAGGGTCTTGACAAATATTTGCAT 5607 >seq137 Length=652956 Score = 105 bits (116), Expect = 1e-17 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || || || ||||| || | |||||| ||||||||||| || ||||| || || || ||| Sbjct 513245 TGCTTCCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATCCCTTCCTTGTCCTGGATT 513186 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| ||| | ||| ||||||||| ||| || || || |||||||| || || || Sbjct 513185 TTGGCTTTGACATTGTCAATAGTATCACTAGATTCGACCTCAAGAGTTATGGTCTTGCCA 513126 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || ||||| Sbjct 513125 GTCAGGGTTTTCACAAAGATCTGCAT 513100 >seq26 Length=1968749 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| || || |||| || | || | || || || ||||| || Sbjct 78470 ATACCACCTCTCAAACGTAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTATAATCA 78411 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | |||| ||| || | ||||| || ||||| || || ||||| ||||| || Sbjct 78410 GCAAGGGTTCGTCCATCCTCAAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGG 78351 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || |||| ||| | ||| ||||||||| || || Sbjct 78350 GGGATCCCTTCCTTATCCTGGATCTTGGCTTTCACATTATCAATAGTATCCGAGCTTTCC 78291 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || ||||| ||||| |||||||| Sbjct 78290 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCAT 78241 >seq78 Length=1009284 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || ||||| |||| ||||| |||| || || |||||||||||| Sbjct 220718 ATCCCACCACGCAGACGAAGCACCAAATGCAGAGTAGATTCCTTCTGAATATTATAGTCA 220777 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | ||||| || |||||||| | || || ||||| || Sbjct 220778 GCAAGGGTCCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGATCCGGT 220837 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || ||||| || | ||| ||| || || || || Sbjct 220838 GGGATCCCTTCCTTGTCCTGAATCTTGGTCTTCACATTGTCAATTGTGTCAGAGCTTTCC 220897 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || || || || || || ||||| || ||||| Sbjct 220898 ACCTCAAGGGTAATAGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 220947 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || ||| || |||| |||| || | || || ||||||||||| Sbjct 200886 ATCCCACCACGCAGTCGGAGCACCAAGTGCAGAGTTGATTCCTTCTGGATATTATAGTCT 200945 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | || || | |||||| || ||||| || | ||||| ||||| || Sbjct 200946 GCAAGAGTGCGACCTTCCTCAAGTTGTTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGT 201005 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || |||||||| || || || || | ||| ||| ||||| || || Sbjct 201006 GGAATTCCCTCCTTATCTTGGATCTTTGTCTTGACATTATCAATGGTATCCGAGCTTTCC 201065 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || || || ||||| | ||||| ||||| || ||||| Sbjct 201066 ACCTCCAAAGTAATTGTCTTTCCTGTCAAGGTTTTCACAAAGATCTGCAT 201115 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || ||||| |||| ||||| |||| || || |||||||||||| Sbjct 201114 ATCCCACCACGCAGACGAAGCACCAAATGCAGAGTAGATTCCTTCTGAATATTATAGTCA 201173 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || || ||| || | ||||| || ||||| || | || || ||||| || Sbjct 201174 GCAAGGGTCCTTCCATCTTCAAGCTGTTTGCCAGCAAAGATAAGCCTTTGCTGATCCGGT 201233 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || || || || ||||| || | ||| ||| || || || || Sbjct 201234 GGGATCCCTTCCTTGTCCTGAATCTTGGTCTTCACATTGTCAATTGTGTCAGAGCTTTCC 201293 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || || || || || || ||||| || ||||| Sbjct 201294 ACCTCAAGGGTAATAGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 201343 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||| | || ||| || |||| |||| || | || || ||||||||||| Sbjct 220490 ATCCCACCACGCAGTCGGAGCACCAAGTGCAGAGTTGATTCCTTCTGGATATTATAGTCT 220549 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | || || | |||||| || ||||| || | ||||| ||||| || Sbjct 220550 GCAAGAGTGCGACCTTCCTCAAGTTGTTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGT 220609 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || |||||||| || || || || | ||| ||| ||||| || || Sbjct 220610 GGAATTCCCTCCTTATCTTGGATCTTTGTCTTGACATTATCAATGGTATCCGAGCTTTCC 220669 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||| || || || || || | ||||| ||||| || ||||| Sbjct 220670 ACCTCCAAAGTAATTGTCTTTCCCGTCAAGGTTTTCACAAAGATCTGCAT 220719 >seq185 Length=543210 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||||||||| || |||| ||| | |||| ||| || ||| || ||||| Sbjct 498448 ATGCCACCTCTCAATCGGAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCA 498389 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | ||| || | ||| || || |||||||| | ||||| || || || Sbjct 498388 GCAAGGGTACGGCCATCCTCAAGTTGCTTGCCAGCAAAAATGAGCCTCTGCTGGTCTGGT 498329 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || || || || || |||| |||| ||| |||||| || || || Sbjct 498328 GGGATCCCCTCCTTGTCCTGGATCTTGGCCTTTACATTATCAATAGTGTCAGAGCTTTCC 498269 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || || || || || || || || |||||||| Sbjct 498268 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 498219 >seq461 Length=207379 Score = 84.2 bits (92), Expect = 4e-11 Identities = 160/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||| |||| | || || || ||||| | || ||| || |||||| || ||| Sbjct 160184 ATACCTCCTCGGAGACGGAGGACAAGATGGAGGGTGCTCTCCTTCTGAATATTGTAATCG 160125 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | ||||||||||| || |||| | ||||||||| || Sbjct 160124 GCCAAAGTTCGGCCATCTTCCAGCTGTTTTCCGGCGAAGATTAGACGCTGTTGATCCGGT 160065 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || |||| || | || || || ||| ||| Sbjct 160064 GGGATGCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTGTCGATGGTGTCGCTGCTCTCC 160005 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTATT 193366 || || ||||| || || || || || || ||||| || || || ||||| || || Sbjct 160004 ACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATCTGCATATTTTT 159949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899546272786800