Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq435 122 1e-22 seq78 105 1e-17 seq70 95.1 2e-14 seq663 89.7 8e-13 seq185 89.7 8e-13 seq41 89.7 8e-13 seq549 84.2 3e-11 seq461 84.2 3e-11 >seq435 Length=220439 Score = 122 bits (134), Expect = 1e-22 Identities = 307/464 (66%), Gaps = 7/464 (2%) Strand=Plus/Plus Query 17860 AGCTTTTTTGTATTCTCCGACTTTTTTCTCGAAGAAATTTGTCTTTCCTTCCAATGATAT 17919 ||| |||| || || |||||| |||||||||||||||||||||| |||| ||| ||||| Sbjct 104334 AGCCTTTTGATACTCCCCGACTCTTTTCTCGAAGAAATTTGTCTTCCCTTGCAAGGATAT 104393 Query 17920 TAAATTCATAAAATCAAATGGATTAGTGGTTTTATAATATTTTTCTTGTATTAATTCGTA 17979 || | ||| ||||||||||||||| || || ||| | | | || | Sbjct 104394 CAACTCCATCCAATCAAATGGATTAGCCACATTGTA--CACCTTCCCGCACCCAAGCGCA 104451 Query 17980 --TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCT 18037 || | ||||| |||||||| || | ||| || |||||| || | |||||| || Sbjct 104452 CCCAACAGCCTATCAGCTACAAACTCAATATACTGACTCATCAATTCCCCATTCATCCCC 104511 Query 18038 AGTAGTCTGAAAGGTAGAGCATCAATAATAAATTCTTTCTCTATCTCAACAGACTCTTTT 18097 | | | | ||||| | || | | ||| || ||||||| || |||| ||| || Sbjct 104512 ACCAAAGCGCATGGTAGCGAGTCCACCACAAACTCCCTCTCTATATCCACAGCCTCCTTC 104571 Query 18098 ATTATGTTTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAAA 18157 | ||| | || | | || ||| || | | | | ||| | | Sbjct 104572 ACTATCCCCTTCACGCGCTCCTCACTCAGTTTCTTCCTCAACAGGCTGTAA---AGAAGG 104628 Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 ||||| |||||| || | |||||||||| || || || ||||| || || | Sbjct 104629 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGG 104688 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||||| || | |||||||||||||||||||| ||||| | || || ||| Sbjct 104689 CCTGGCATTAGCCCACGTTTTTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 104748 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT 18321 || || || ||||| || || || ||||| || || |||||||| Sbjct 104749 ATCCCTTCCACGCAAGCAAATGCGATTAACCTCTCCGCAAAACT 104792 >seq78 Length=1009284 Score = 105 bits (116), Expect = 1e-17 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | ||||| | |||||||||||||| || || || || || || Sbjct 220491 ATGCAGATATTTGTGAAAACCCTCACTGGAAAAACTATCACCTTGGAGGTGGAGAGCTCG 220432 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| |||| || || |||||||| ||||| || || || || || Sbjct 220431 GATACTATTGATAACGTCAAAACAAAGATCCAAGATAAGGAAGGGATTCCACCGGACCAG 220372 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||| ||||||| ||| || || ||||| || ||| Sbjct 220371 CAAAGGTTGATTTTTGCTGGAAAACAGCTGGAGGAT 220336 Score = 96.9 bits (106), Expect = 5e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | |||||||||||||| || || || || || || Sbjct 200887 ATGCAGATTTTTGTGAAAACCCTCACTGGAAAAACTATCACCTTGGAGGTGGAGAGCTCG 200828 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||||| || | || || |||||||| ||||| || || || || || Sbjct 200827 GATACTATTGATAACGTTAAGACAAAGATCCAAGATAAGGAAGGGATTCCACCGGACCAG 200768 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||| ||||||| ||| || || ||||| || ||| Sbjct 200767 CAAAGGTTGATTTTTGCTGGAAAACAGCTGGAGGAT 200732 >seq70 Length=1087276 Score = 95.1 bits (104), Expect = 2e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || |||||||| || || || || || || || || || Sbjct 269060 ATGCAAATTTTTGTGAAGACTTTGACTGGGAAGACCATCACCTTGGAGGTGGAGAGCTCC 269119 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || |||||| ||||||||||| ||||| |||||||| ||| Sbjct 269120 GACACCATTGATAATGTCAAGGCTAAAATCCAAGATAAAGAGGGCATCCCTCCAGACCAA 269179 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || | || | ||| || ||||| ||||| ||| | ||| | | ||||| || Sbjct 269180 CAGAGGCTCATCTTTGCTGGCAAGCAACTCGAGGATGGGCGCACTCTCGCTGATTACAAC 269239 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || |||||||| ||| Sbjct 269240 ATCCAGAAGGAGTCCACCCTTCATTTGGTG 269269 Score = 89.7 bits (98), Expect = 8e-13 Identities = 130/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||||||||||| || || | || || || ||| Sbjct 269515 AATGCAAATCTTTGTCAAGACCCTGACTGGAAAAACCATCACCCTGGAGGTTGAGAGTTC 269574 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || ||||| |||||| || || || || || || || ||||| || Sbjct 269575 AGACACCATTGATAATGTGAAGGCTAAAATCCAGGACAAGGAGGGGATTCCACCAGACCA 269634 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || ||| |||| | ||| || |||||||| |||||| || || | ||||||| || Sbjct 269635 GCAGAGACTGATCTTTGCAGGGAAGCAGCTTGAAGATGGAAGGACCCTGGCAGATTACAA 269694 Query 156002 TATA 156005 ||| Sbjct 269695 CATA 269698 >seq663 Length=136023 Score = 89.7 bits (98), Expect = 8e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA-AGATTC 155881 ||||| |||||| |||| || ||||| || || || ||||| |||| || || || | Sbjct 60423 ATGCAGATATTTGTTAAGACCTTGACAGGGAAGACCATTACCCTAGAGGTGGAGAGCAGC 60364 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||||| || || || |||||||| || ||||| || || || || Sbjct 60363 -GACACCATCGACAACGTCAAGGCCAAGATTCAAGATAAGGAGGGCATCCCGCCGGATCA 60305 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | ||||| | ||||| || |||||||||||| | ||||| | |||||||| Sbjct 60304 ACAACGTTTGATCTTCGCCGGAAAACAGCTCGAAGATGGTCGGACTTTGGCCGATTATAA 60245 Query 156002 TAT 156004 ||| Sbjct 60244 TAT 60242 Score = 86.0 bits (94), Expect = 9e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA-AGATTC 155881 ||||| |||||| | || || ||||| || ||||| ||||| |||| || || || | Sbjct 60195 ATGCAGATATTTGTGAAGACCTTGACAGGGAAAACCATTACTCTAGAGGTAGAGAGCAGC 60136 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||||| || || || ||||| || || ||||| || || || || Sbjct 60135 -GACACCATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAGGGCATCCCACCTGATCA 60077 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 |||| | ||||| | ||| || ||||||||||||||| | | ||| | | || || || Sbjct 60076 ACAACGTTTGATCTTTGCAGGAAAGCAGCTCGAAGATGGCCGGACTCTGGCTGACTACAA 60017 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 ||| |||||| | || ||||| Sbjct 60016 TATCCAGAAAGAGTCTACCCTTCA 59993 >seq185 Length=543210 Score = 89.7 bits (98), Expect = 8e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||||||||| || || || | || ||||| || Sbjct 499130 AATGCAAATTTTTGTCAAGACTTTGACTGGAAAGACCATCACTCTGGAGGTCGAGAGCTC 499189 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| |||||||| || || || || || ||||| || || ||||| || Sbjct 499190 AGACACCATTGACAACGTGAAGGCCAAGATCCAGGACAAGGAAGGTATTCCCCCAGACCA 499249 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 |||||| ||||| | ||| || |||||| | |||||| Sbjct 499250 ACAAAGGTTGATCTTTGCTGGAAAGCAGTTGGAAGAT 499286 >seq41 Length=1573182 Score = 89.7 bits (98), Expect = 8e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || ||||||||||| || || || | || || || ||| Sbjct 839972 AATGCAAATCTTTGTTAAGACTTTGACTGGAAAGACCATCACCCTGGAGGTGGAGAGTTC 839913 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| || || || ||| || || || || ||||| || || || || || Sbjct 839912 AGACACCATTGACAATGTCAAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCTGACCA 839853 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||||| ||||| | |||||| |||||| | |||||| | || || |||| || || Sbjct 839852 GCAAAGGTTGATCTTTGCCGGAAAGCAGTTGGAAGATGGGCGCACCCTAGCAGACTACAA 839793 Query 156002 TATATCCAAAGAGGCGACGCTTCA 156025 ||| || ||| | || ||||| Sbjct 839792 TATCCAGAAGGAGTCCACCCTTCA 839769 >seq549 Length=172529 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 18158 CACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAAC 18217 ||||| |||||| || | |||||||||| || || || ||||| ||| |||| | Sbjct 30841 CACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAGC 30782 Query 18218 CCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAAT 18277 || ||||| | || | ||||||| ||||||||||| ||||| | || || ||| Sbjct 30781 CCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAAT 30722 Query 18278 ATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACT 18321 || || || ||||| || || || | || ||||| || ||||| Sbjct 30721 ATCCCTTCCACGCAAGCAAAAGCAACTAGCCTTTCCGCGAAACT 30678 >seq461 Length=207379 Score = 84.2 bits (92), Expect = 3e-11 Identities = 152/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGA-AGATTC 155881 ||||| || ||| | || || | || ||||| ||||| || |||| || || || | Sbjct 160411 ATGCAGATTTTTGTGAAGACCCTAACCGGAAAGACTATCACGCTAGAGGTGGAGAGCAGC 160470 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || ||||| || || || || || || || || || || ||||| || Sbjct 160471 -GACACCATCGACAACGTCAAGGCAAAGATTCAGGACAAGGAGGGGATCCCACCAGACCA 160529 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || |||||||| | ||| || |||||||| |||||| ||| ||| | | |||||||| Sbjct 160530 GCAGAGATTGATCTTTGCTGGGAAGCAGCTGGAAGATGGCAGGACTCTGGCGGATTATAA 160589 Query 156002 TATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAG 156037 ||| || ||| ||| | || |||||| | ||| |||| Sbjct 160590 TAT-TCAAAAGGAGTCAACTCTTCATCTTGTGCTAAG 160625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731784038134000