Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq189 111 3e-19 seq78 105 1e-17 seq461 102 1e-16 seq26 100 5e-16 seq41 93.3 8e-14 seq185 87.8 3e-12 seq70 86.0 1e-11 >seq189 Length=529659 Score = 111 bits (122), Expect = 3e-19 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 171888 ATATTATAATCTGATAAAGATCGTTCG-TCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||||||||||| | || | || | | || || |||||||| ||||||||||||| || Sbjct 461484 ATATTATAATCCGC-AAGGGTCCTACCATCCTCTAATTGTTTCCCAGCAAAAATTAGCCT 461426 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 |||||| || || || || |||||||| ||||| || || ||||| || ||||| Sbjct 461425 CTGTTGATCCGGAGGGATACCTTCTTTGTCTTGAATCTTGGCCTTTACGTTGTCAATAGT 461366 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 ||| || || ||||| ||||| |||||||| || |||| ||||| | ||| || || Sbjct 461365 ATCGGAACTCTCGACTTCAAGAGTTATGGTTTTGCCGGTTAGGGTTTTGACGAAGATTTG 461306 Query 172067 CAT 172069 ||| Sbjct 461305 CAT 461303 >seq78 Length=1009284 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | || || || | ||| || ||||| || |||| Sbjct 200432 ACCACCGCGAAGGCGGAGGACAAGGTGCAATGTGGACTCCTTTTGGATATTGTAGTCTGC 200491 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 || | ||| | || ||||| || ||||||||||| || || ||||| ||||| ||||| Sbjct 200492 CAAGGTGCGTCCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGG 200551 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || || ||||| || || | || || ||| || ||||| || ||| || Sbjct 200552 GATCCCCTCCTTGTCTTGGATCTTTGTCTTCACGTTATCAATGGTATCGGAGCTTTCCAC 200611 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||||||||| || || || || || || | || |||||||| Sbjct 200612 CTCAAGAGTAATGGTCTTTCCTGTCAAGGTCTTGACAAAAATCTGCAT 200659 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || ||||| | ||| | || || |||||| || ||| Sbjct 220262 ATCCCACCACGCAGACGGAGCACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAGTCT 220321 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || |||| ||||| ||||||||||| || || || ||||| ||| Sbjct 220322 GCAAGGGTGCGACCATCCTCCAGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGT 220381 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || |||| || ||| |||||||| || || Sbjct 220382 GGAATCCCTTCCTTATCTTGGATCTTTGTTTTGACGTTATCAATAGTATCCGAGCTCTCC 220441 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || ||||| ||||| | ||||| | ||||||||||| Sbjct 220442 ACCTCCAAGGTGATAGTTTTTCCAGTGAGGGTTTTCACAAATATCTGCAT 220491 Score = 100 bits (110), Expect = 5e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||| || | || | || || || | ||| || ||||| || |||| Sbjct 220036 ACCACCGCGAAGGCGGAGGACAAGGTGCAATGTGGACTCCTTTTGGATATTGTAGTCTGC 220095 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 | | ||| | || ||||| || ||||||||||| || || ||||| ||||| ||||| Sbjct 220096 CAGGGTACGTCCATCTTCCAACTGCTTACCAGCAAAGATCAACCTCTGCTGGTCTGGTGG 220155 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 || || || || ||||| || || | || || ||| || ||||| || ||| || Sbjct 220156 GATCCCCTCCTTGTCTTGGATCTTTGTCTTCACGTTATCAATGGTATCAGAGCTTTCCAC 220215 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || ||||||||||| || || || || || || | || |||||||| Sbjct 220216 CTCAAGAGTAATGGTCTTTCCTGTCAAGGTCTTGACAAAAATCTGCAT 220263 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | || || | || ||||| | ||| | || || |||||| || ||| Sbjct 200658 ATCCCACCACGCAGACGGAGCACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAGTCT 200717 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || |||| ||||| ||||||||||| || || || ||||| ||| Sbjct 200718 GCAAGGGTGCGACCATCCTCCAGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGT 200777 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| |||||||| || || | || || ||| |||||||| || || Sbjct 200778 GGAATCCCTTCCTTATCTTGGATCTTTGTCTTAACGTTATCAATAGTATCCGAGCTCTCC 200837 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | || || ||||| ||||| | ||||| | || |||||||| Sbjct 200838 ACCTCCAAGGTGATAGTTTTTCCAGTGAGGGTTTTCACAAAAATCTGCAT 200887 >seq461 Length=207379 Score = 102 bits (112), Expect = 1e-16 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||| ||||| || | || | ||||| |||||| ||||||||||| | Sbjct 160865 CCACCGCGAAGGCGTAAGACAAGGTGAAGAGTAGACTCTTTCTGGATATTATAATCAGCC 160806 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| | | | || ||||| || || ||||||||||| | || || ||||| ||||| Sbjct 160805 AAAGTCCTTCCATCCTCCAACTGCTTCCCAGCAAAAATCAGCCTTTGCTGGTCCGGTGGA 160746 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT--A 172020 || || || || || || || || || ||||| || || || || | ||| | Sbjct 160745 ATGCCCTCCTTGTCCTGAATCTTCGCCTTGACATTGTCAATGGTGTC--ACTACTCTCCA 160688 Query 172021 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 | || ||||||||||| || || || ||||| || | || |||||||| Sbjct 160687 CCTCCAGAGTAATGGTCTTCCCCGTCAATGTCTTCACAAAAATCTGCAT 160639 Score = 87.8 bits (96), Expect = 3e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 |||||||||||| | || || || | || || | |||||| ||||| || || || | Sbjct 160365 AATATTATAATCAGCTAGAGTCCGACCATCCTCAAGTTGTTTCCCAGCGAAGATCAAACG 160306 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||||| || ||||| || ||||| || ||||| ||||| || || || || || Sbjct 160305 TTGTTGATCTGGTGGGATCCCTTCCTTGTCTTGAATTTTTGCCTTAACGTTGTCGATGGT 160246 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || ||| || || ||||||||||| || || || || || || | ||||||||| Sbjct 160245 GTCGCTGCTTTCGACCTCGAGAGTAATGGTCTTCCCGGTCAAGGTCTTGACGAATATCTG 160186 Query 172067 CAT 172069 ||| Sbjct 160185 CAT 160183 >seq26 Length=1968749 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| | |||| || || || | ||| | || || || |||||||| Sbjct 78470 ATACCACCTCTCAAACGTAGAACCAAGTGGAGAGTGGATTCCTTTTGGATGTTATAATCA 78411 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | |||| | || || | ||||| |||||||| || || ||||| || || || Sbjct 78410 GCAAGGGTTCGTCCATCCTCAAGCTGTTTGCCAGCAAAGATCAACCTCTGCTGATCTGGG 78351 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| ||||| || || || ||| |||||| |||||||| || ||| Sbjct 78350 GGGATCCCTTCCTTATCCTGGATCTTGGCTTTCACATTATCAATAGTATCCGAGCTTTCC 78291 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | ||||| | || || ||||| Sbjct 78290 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATTTGCAT 78241 >seq41 Length=1573182 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 171924 TGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATT 171983 ||||| ||||||||||| || ||||| ||||| ||||| || || || || || || ||| Sbjct 840054 TGTTTTCCAGCAAAAATCAACCTCTGCTGGTCTGGTGGGATCCCCTCCTTGTCCTGAATT 840113 Query 171984 TTATTTTTTACATTAGTTATAGTATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCA 172043 || ||||||||| ||||| || || || || || | |||||||| || ||| Sbjct 840114 TTGGCCTTTACATTATCGATAGTGTCAGAGCTCTCCACCTCCAAGGTAATGGTCTTCCCA 840173 Query 172044 GTTAATGTTTTAATGAATATCTGCAT 172069 |||| || || | ||| |||||||| Sbjct 840174 GTTAGAGTCTTCACGAAAATCTGCAT 840199 >seq185 Length=543210 Score = 87.8 bits (96), Expect = 3e-12 Identities = 165/243 (68%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || |||||||| | ||| | || ||||| | |||| ||| || ||| || || || Sbjct 498448 ATGCCACCTCTCAATCGGAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCA 498389 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || | || || | ||| || ||||||||||| | ||||| ||||| ||| Sbjct 498388 GCAAGGGTACGGCCATCCTCAAGTTGCTTGCCAGCAAAAATGAGCCTCTGCTGGTCTGGT 498329 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || || || || || ||||||||| ||||| || || ||| Sbjct 498328 GGGATCCCCTCCTTGTCCTGGATCTTGGCCTTTACATTATCAATAGTGTCAGAGCTTTCC 498269 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTATTATAA 172079 || || || || ||||| || ||||| | || || | ||| || ||||| | | | || Sbjct 498268 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCATCTGAACACAA 498209 Query 172080 AAA 172082 ||| Sbjct 498208 AAA 498206 >seq70 Length=1087276 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||||||||| | || || || | || | ||| || || || || || Sbjct 268607 ATACCACCTCTAAGTCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 268548 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | ||| | || || | ||| || |||||||| || || || || || || || Sbjct 268547 GCGAGTGTGCGTCCATCCTCTAGTTGCTTCCCAGCAAAGATCAACCTTTGCTGATCTGGG 268488 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || || || || ||| ||||||||| || || || || ||| Sbjct 268487 GGAATCCCTTCCTTGTCCTGGATCTTAGCTTTTACATTGTCGATTGTGTCAGAGCTTTCC 268428 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | ||||| | || |||||||| Sbjct 268427 ACCTCAAGGGTGATGGTCTTGCCAGTGAGAGTTTTCACAAAAATCTGCAT 268378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905027213967000