Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq46 102 2e-16 seq423 98.7 3e-15 seq112 98.7 3e-15 seq23 93.3 1e-13 seq14 93.3 1e-13 seq63 91.5 4e-13 seq30 86.0 2e-11 >seq46 Length=1481828 Score = 102 bits (112), Expect = 2e-16 Identities = 274/410 (67%), Gaps = 13/410 (3%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAA--ATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAA 288996 ||| |||||||| || | || | ||||||||| || ||||| |||||||| ||| Sbjct 1477984 AAAGCCATCCAT--TTCTACAAGCAATTGATTAAGGGTACTTTCCCGCTCATCATTAGAA 1477927 Query 288997 CCTCTTGAATCACCCGAATCGCTCCtttttt-tACCAACAGCATCAATTTCGTCAATGAA 289055 || | | |||| ||| || || | || | |||||||| || || ||||| Sbjct 1477926 CC----GGAGAACCCACCACGCCCCCTTGCCCTCCCGATCGCATCAATCTCATCGATGAA 1477871 Query 289056 AATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCC 289115 || | || |||| | ||||| || | ||| || | ||| || | ||||| ||| Sbjct 1477870 TATGATACTAGGAGCACACTGTCTTGCTTCTTGAAACAAGTTTCTCACCCTGGATGGTCC 1477811 Query 289116 AAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAAT-GTTACATTTG 289174 || ||||||| |||| || | || || ||| | |||| | || ||| | |||| | Sbjct 1477810 AACACCAACAAACATCTCCATGAAATCTGAACCAGATA-TAGATAGAAAAGGTACACCAG 1477752 Query 289175 CTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATA 289234 ||| || || |||| | || ||||| ||||| || ||||| || || || | || | Sbjct 1477751 ATTCCCCAGCAGTTGCCTTTGCTAGAAGGGTCTTTCCAGTTCCTGGAGGACCGACCAAAA 1477692 Query 289235 GAACTCCCTTTGGTACTTTTGCCCC-AGCAGACTTATATTTCTCAGGGCTCTTTAAAAAT 289293 || | || ||||| | || || || ||| || || |||| |||||| || | || Sbjct 1477691 GAGCACCTTTTGGAATCTTCGCACCTAGCTC-CTCGTACTTCTTAGGGCTTTTGAGGAAG 1477633 Query 289294 TCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | |||| |||| | || | |||||||||||||| || || ||||| Sbjct 1477632 TGCACAAATTCCATGATCTCTTGCTTTGCCTCATCACAACCAGCAACATC 1477583 >seq423 Length=228728 Score = 98.7 bits (108), Expect = 3e-15 Identities = 324/496 (65%), Gaps = 11/496 (2%) Strand=Plus/Minus Query 288852 ATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCTGC 288911 |||||||| ||||| | |||||| |||||| ||||| | ||||||||| | || Sbjct 167809 ATCAAACCGACCAGGTCTCAACAATGCTTTGTCTAAGATATCAGGTCTGTTTGTGCCAGC 167750 Query 288912 CAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAA--ATTTGATTA 288969 | ||||| | | ||| | |||||||||||| || || | || ||| Sbjct 167749 AAGCACAACTACACCGGAGGTGGTCCCAAATCCATCCAT--TTCCACAAGCAACTGGTTA 167692 Query 288970 AGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttttttA 289029 || || ||| | |||||||| |||| ||| ||| | || |||| | | Sbjct 167691 AGAGTACTTTCGCGCTCATCATTGCCACCT---GAAAAACCTCCACGGCCCCTTGCTCGA 167635 Query 289030 CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCA 289089 |||| ||||| | ||| |||||||| || | | || | | |||||| || Sbjct 167634 CCAATTGCATCTACTTCATCAATGAATATAATGCTAGGTGCACATTGTCTTGCCTCCTGG 167575 Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 ||||| ||| || | ||||| |||| |||||| ||||||| | || ||||| | Sbjct 167574 AATAAGCTTCTAACTCTGGATGGCCCAACTCCAACAAACATTTCCATGAAATCAGACCCA 167515 Query 289150 GATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || | | || | ||| | ||| | ||| || || |||| | || ||||| || || Sbjct 167514 GACA-TGGATAAGAAAGGCACACCAGATTCACCAGCAGTTGCCTTTGCAAGAAGCGTTTT 167456 Query 289209 ACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGACT 289267 ||||| || ||||| || | | || | || ||||| | ||| || |||| | || Sbjct 167455 CCCTGTGCCTGGTGGGCCTACAAGGAGGGCACCTTTTGGAATTTTAGCTCCCAACTC-CT 167397 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 |||||||| || |||| | || | ||||| ||| || || | |||||||||| Sbjct 167396 CATATTTCTTTGGATTCTTGAGGAAGTGTACAAACTCCATAATCTCTTGCTTTGCCTCAT 167337 Query 289328 CACATCCTGCTACATC 289343 |||| || |||||||| Sbjct 167336 CACAGCCAGCTACATC 167321 >seq112 Length=778930 Score = 98.7 bits (108), Expect = 3e-15 Identities = 211/310 (68%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 289036 GCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAAT 289095 |||||||| || || ||||| || | || |||| | ||||| || | ||| || Sbjct 663439 GCATCAATCTCATCGATGAATATGATACTAGGAGCACACTGTCTTGCTTCTTGAAACAAG 663498 Query 289096 TCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACT 289155 | ||| || | ||||| ||||| ||||||| |||| || | || || ||| | |||| | Sbjct 663499 TTTCTCACCCTGGATGGTCCAACACCAACAAACATCTCCATGAAATCTGAACCAGATA-T 663557 Query 289156 TGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGT 289214 || ||| | |||| | ||| || || |||| | || ||||| ||||| || || Sbjct 663558 AGATAGAAAAGGTACACCAGATTCCCCAGCAGTTGCCTTTGCTAGAAGGGTCTTTCCAGT 663617 Query 289215 TCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC-AGCAGACTTATATT 289273 ||| || || || | || ||| | || ||||| | || || || ||| || || | Sbjct 663618 TCCTGGAGGACCGACCAAAAGAGCACCTTTTGGAATCTTCGCACCTAGCTC-CTCGTACT 663676 Query 289274 TCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATC 289333 ||| |||||| || | || | |||| |||| | || | |||||||||||||| | Sbjct 663677 TCTTAGGGCTTTTGAGGAAGTGCACAAATTCCATGATCTCTTGCTTTGCCTCATCACAAC 663736 Query 289334 CTGCTACATC 289343 | || ||||| Sbjct 663737 CAGCAACATC 663746 >seq23 Length=2045696 Score = 93.3 bits (102), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||| || || ||||| ||||| || ||||| | |||||| || | | Sbjct 906693 TACCTTTCCTCTTGCCTCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCA 906634 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||| |||| ||| ||||| || || ||||| ||||| ||||||| |||| | | Sbjct 906633 ACATTGGAACAATGCCATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCAC 906574 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 | | || |||| | || ||||| || || | ||||| || ||| || |||| Sbjct 906573 GGATGTTGTGAACAGATACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCT 906514 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | |||| | || ||||||||| |||||||| ||| Sbjct 906513 TCAATGTATCATATATTCCTTCAATACTATCATCTTTCAT 906474 Score = 84.2 bits (92), Expect = 6e-11 Identities = 103/139 (74%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 156013 TATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCCT 156069 |||||| ||| |||||||||||||| ||||||| ||| ||||||||| || || | Sbjct 1176952 TATCAGCATGCCATGGCTCCAGATACACAGCAAAAGCACCTTTCCTCTTGCCTCCTCCTT 1176893 Query 156070 GATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAG 156129 ||| | ||| |||||| | | |||||| || ||| ||| | || ||| ||||| | | Sbjct 1176892 TATCAATATAGCGAGCAATATCATTGAACAC-CCTCACATTGCAACAATGCCATTAAATG 1176834 Query 156130 TGCCATTGGTTCCGCGAAT 156148 | ||||| | || ||||| Sbjct 1176833 TCCCATTTGCCCCACGAAT 1176815 >seq14 Length=2767599 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 301863 AACACCAGCAAAGTGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTG 301922 |||||||||| ||||||||||||| || || | |||||||| |||||||||||| ||| Sbjct 2655576 AACACCAGCATAGTGGAAAGTATTGAGGGTCATTTGAGTAGCTGGCTCACCAATGGATTG 2655635 Query 301923 TGCCGCAATCATACCAACCATTTCTCCTGGTGCTACAATAGACT 301966 ||| |||| ||||| ||| || |||||||| || | |||| Sbjct 2655636 TGCAGCAACACAACCAATCATCTCACCTGGTGCAACTAATGACT 2655679 >seq63 Length=1160758 Score = 91.5 bits (100), Expect = 4e-13 Identities = 178/263 (68%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 289090 AATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGCG 289149 || || || || || | || || || | ||||||| |||| || | ||| || || | Sbjct 152678 AACAAGTCCCTAACTCTTGAAGCCCCTACACCAACAAACATCTCAATAAACTCTGATCCT 152737 Query 289150 GATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTA 289209 || | || ||| | || |||||| || |||| ||| | || || | || || Sbjct 152738 GACAGAGAAAAGAAAGGAACGCCTGCTTCTCCAGCTATTGCTTTAGCTAGCAAGGTTTTT 152797 Query 289210 CCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTA 289269 || ||||| || ||||| |||| ||||||||||| || | |||| || | | | Sbjct 152798 CCAGTTCCTGGAGGTCCTACTAACAGAACTCCCTTAGGAATGCTTGCACCTACTGCAGCA 152857 Query 289270 TATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCA 289329 | ||||| || | ||||| |||||||||||||| | || || | ||||| || ||| Sbjct 152858 AACTTCTCTGGAGTTTTTAAGAATTCTACAATTTCTTGAAAATCTTGCTTTGCTTCGTCA 152917 Query 289330 CATCCTGCTACATCAGCAAAAGT 289352 ||| || |||||| |||| || Sbjct 152918 ACTCCAGCAACATCATCAAATGT 152940 >seq30 Length=1891692 Score = 86.0 bits (94), Expect = 2e-11 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| |||||||| || || || ||| |||| |||||| | || |||| | | Sbjct 1240186 ACAGACATGGACTCTATATGCGTCACTCTGGTCAAATAGCCTCTCTTTCAAGAAGTGTGC 1240127 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 ||||| |||| ||||| ||||| || ||||| ||||| || || ||||||||||| || Sbjct 1240126 AGCACCATGTGCTATCATGCAATCTCGTTCCATCTCACCAAAGCGGAGACCACCATCACG 1240067 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAG 251573 | ||| || || |||||||| | ||||| Sbjct 1240066 TGACCTTCCTTCAGCAGGCTGCCTTGTGAG 1240037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471636283570255