Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq549 158 1e-32 seq435 143 3e-28 seq162 87.8 2e-11 >seq549 Length=172529 Score = 158 bits (174), Expect = 1e-32 Identities = 226/313 (72%), Gaps = 4/313 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||| ||||| || ||||||||||| |||||||| || | | |||| | |||||| Sbjct 30541 GAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTTGG 30482 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| |||||||| || ||||| || || ||| || || || || ||||||||| Sbjct 30481 ACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGAAG 30422 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || ||||| || ||| ||||| ||||||| | || |||||||| | Sbjct 30421 AAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGCGG 30362 Query 869813 GTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTAC 869872 | || | ||| || |||||||| || ||||| | |||||||| || || |||||| Sbjct 30361 ATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGTAC 30302 Query 869873 ATCTCCCATACTTGCT-GGTAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGTCGC 869930 |||||||| | ||| | |||| | || ||||| | ||| || |||| ||||| || Sbjct 30301 ATCTCCCAGA-TTGATGGGTACTGAATGGGGAACA-TACAGAACCGGTCTGGGTTTTCAG 30244 Query 869931 GCAACAGGGGTTC 869943 || |||||||| Sbjct 30243 CCAGGAGGGGTTC 30231 Score = 91.5 bits (100), Expect = 2e-12 Identities = 181/266 (68%), Gaps = 8/266 (3%) Strand=Plus/Minus Query 869186 TCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 869245 |||||| ||||| ||||| ||||| || || ||||| | || ||||| || | | Sbjct 30812 TCGCGA--GATCAACTCGTTCGAAAAGGTTAGCCCCGGCATCAACCCACGCTTTTTTAAC 30755 Query 869246 CAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATG 869305 ||||| || || || ||||| ||||||||||| || || || ||| ||||| | | Sbjct 30754 CAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCCACGCAAGCAAAAGCAACT 30695 Query 869306 AGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCC 869365 |||| || || || | ||| |||| || |||||| || ||||| ||| Sbjct 30694 AGCCTTTCCGCGAAACTCTCG-----CTCC-CGTCAATCCACCGCAAGGCCCACCGTGCC 30641 Query 869366 TTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGG 869425 || || ||| |||||||||| ||||| || |||| ||| | | ||| || | | Sbjct 30640 TTCTTAGCCACGCACGGCACCGTTTCGATAGCATGAAACAGGCGATTCTTCTCCTCAGAA 30581 Query 869426 TCCTTGACATAGGTGTCGATCAGGAG 869451 ||||||| ||| || || | ||| || Sbjct 30580 TCCTTGATATAAGTCTCCAACAGAAG 30555 >seq435 Length=220439 Score = 143 bits (158), Expect = 3e-28 Identities = 217/301 (72%), Gaps = 6/301 (2%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 |||||||||| ||||| || ||||||||||| ||||| || || | | |||| | |||| Sbjct 104927 CCGAGTGGATATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTT 104986 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 |||| || |||||||| || ||||| | |||||| ||||| || || ||| |||| Sbjct 104987 GGACTTCTTTCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCAGCGA 105046 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGA 869810 | || || |||||||| || ||||| |||||| | || |||||| || Sbjct 105047 AGAAGGCAAGGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGT-GA 105105 Query 869811 CGGTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 ||| | || | ||| || ||||| || || ||||| | |||||| || ||||| ||| Sbjct 105106 CGGAGATCTGAAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAGCCTTCTTG 105165 Query 869870 TACATCTCCCATACTTGCTGG-TAGCGGATAGGGAAGAGGACA-AAGCGGTTGGGGTTGT 869927 ||||||||||| | ||| ||| || | || ||||| | ||| || |||| ||||| | Sbjct 105166 TACATCTCCCAGA-TTGATGGATATTGAATTGGGAACA-TACAGAATCGGTCTGGGTTTT 105223 Query 869928 C 869928 | Sbjct 105224 C 105224 Score = 114 bits (126), Expect = 2e-19 Identities = 181/257 (70%), Gaps = 8/257 (3%) Strand=Plus/Plus Query 869186 TCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 869245 |||||| ||||| ||||| |||| ||||| ||||| || || || || || ||| Sbjct 104658 TCGCGA--GATCAACTCGTTCGAGAAGGTCAGGCCTGGCATTAGCCCACGTTTTTTTAGC 104715 Query 869246 CAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATG 869305 ||||| || || || ||||| ||||||||||| || || || ||| ||||| |||| Sbjct 104716 CAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCCACGCAAGCAAATGCGATT 104775 Query 869306 AGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCC 869365 | || ||| ||||| | ||| ||||| || |||||| | ||||| || ||| Sbjct 104776 AACCTCTCCGCAAAACTCTCG----CCTCC--GTCTATCCACCGTAAAGCCCACTCCGCC 104829 Query 869366 TTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGG 869425 || || ||| |||||||||| || ||||| |||| || ||| ||| || | | Sbjct 104830 TTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACAGACGGTTCTTCTCAGTAGAA 104889 Query 869426 TCCTTGACATAGGTGTC 869442 ||||||| ||||| || Sbjct 104890 TCCTTGATGTAGGTCTC 104906 >seq162 Length=601461 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| |||||||| |||| ||| | ||| || ||||||| || Sbjct 391139 GCAGCTAACTACCTGAACATCAAGGACTTGCTAGATTTGACCTGCCAGACTGTGGCTGAC 391080 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 ||||||||||| ||| | || || ||||| |||||||| |||||||||||| Sbjct 391079 ATGATCAAGGGGAAGACTCCAGAAGAGATTCGCAAGACATTTAACATCAAG 391029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106350148072955