Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq189 113 4e-20 seq461 84.2 2e-11 seq78 84.2 2e-11 >seq189 Length=529659 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || |||||||| |||||||||||||||| || | ||| ||| | | Sbjct 461303 ATGCAAATCTTCGTCAAAACCCTAACCGGCAAAACCATAACTCTTGAAGTCGAGAGTTCC 461362 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | | ||||| |||||| ||||||||||| | || ||||||| Sbjct 461363 GATACTATTGACAACGTAAAGGCCAAGATTCAAGACAAAGAAGGTATCCCTCCGGATCAA 461422 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || |||| ||| || ||||| | ||||||| || || | |||||||| || Sbjct 461423 CAGAGGCTAATTTTTGCTGGGAAACAATTAGAGGATGGTAGGACCCTTGCGGATTATAAT 461482 Query 110453 ATTCAAAAAGAATCTAC 110469 || ||||| || || || Sbjct 461483 ATCCAAAAGGATTCCAC 461499 >seq461 Length=207379 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 || ||||| || || || ||||| | |||||||| ||||| || | || |||| Sbjct 159952 AATATGCAGATCTTCGTGAAAACCCTCACCGGCAAGACCATCACTCTGGAGGTGGAGAGC 160011 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 ||| || ||| | | || || |||||| ||||| |||||| | || |||| Sbjct 160012 AGCGACACCATCGACAACGTCAAGGCCAAGATTCAAGACAAGGAAGGCATCCCACCGGAT 160071 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 ||||| | || || | || || ||||||||||| |||| | |||| |||| |||||| Sbjct 160072 CAACAGCGTCTAATCTTCGCCGGAAAACAGCTGGAAGATGGCCGAACTTTGGCCGATTAC 160131 Query 110450 AACATTCAAAAAGA 110463 || ||||| || || Sbjct 160132 AATATTCAGAAGGA 160145 >seq78 Length=1009284 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| |||||||| ||||| | || || ||||| || ||| | || |||| Sbjct 220491 ATGCAGATATTTGTGAAAACCCTCACTGGAAAAACTATCACCTTGGAGGTGGAGAGCTCG 220432 Query 110333 GATACTGTCGGCCAGGT-AAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 |||||| | | | || |||||| ||||| || || ||||| | || ||| || Sbjct 220431 GATACTATTGATAACGTCAAAACA-AAGATCCAAGATAAGGAAGGGATTCCACCGGACCA 220373 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||| | |||| ||| || |||||||||||||||| | || | || || ||||| Sbjct 220372 GCAAAGGTTGATTTTTGCTGGAAAACAGCTGGAGGATGGTCGCACCCTTGCAGACTACAA 220313 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||||| || ||||| || |||| ||||| | | ||||| || || Sbjct 220312 TATTCAGAAGGAATCAACTCTGCATTTGGTGCTCCGTCTGCGTGGTGG 220265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412793222060195