Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq435 145 1e-28 seq549 138 2e-26 >seq435 Length=220439 Score = 145 bits (160), Expect = 1e-28 Identities = 227/321 (71%), Gaps = 9/321 (3%) Strand=Plus/Plus Query 794347 TCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 794406 |||||| |||||| ||||| ||| ||||| ||||| || || || || || ||| Sbjct 104658 TCGCGA--GATCAACTCGTTCGAGAAGGTCAGGCCTGGCATTAGCCCACGTTTTTTTAGC 104715 Query 794407 CAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACG 794466 ||||| || ||||| ||||| ||||||||||| || || || ||| ||||| ||| Sbjct 104716 CAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCCACGCAAGCAAATGCGATT 104775 Query 794467 AGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCC 794526 | || ||| |||||| | || || || || |||||| | |||||||| ||| Sbjct 104776 AACCTCTCCGCAAAACTCTC---GC---CTCCGTCTATCCACCGTAAAGCCCACTCCGCC 104829 Query 794527 TTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG 794586 || || ||| | |||||||| || ||||| |||| || ||| |||||| | Sbjct 104830 TTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACAGACGGTTCTTCTCAGTAGAA 104889 Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 ||||||| |||||| || | | || ||| |||| |||||||| || || || ||| Sbjct 104890 TCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTCCGAGTGGATATTCTCAATCGCG 104949 Query 794647 ATCTGGAAGCCATA-AAAGCA 794666 |||||||| || || |||||| Sbjct 104950 ATCTGGAACCCGTAGAAAGCA 104970 >seq549 Length=172529 Score = 138 bits (152), Expect = 2e-26 Identities = 222/317 (70%), Gaps = 8/317 (3%) Strand=Plus/Minus Query 794347 TCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 794406 |||||| |||||| ||||| |||| || || ||||| | || ||||| || | | Sbjct 30812 TCGCGA--GATCAACTCGTTCGAAAAGGTTAGCCCCGGCATCAACCCACGCTTTTTTAAC 30755 Query 794407 CAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACG 794466 ||||| || ||||| ||||| ||||||||||| || || || ||| ||||| | || Sbjct 30754 CAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTTCCACGCAAGCAAAAGCAACT 30695 Query 794467 AGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCC 794526 |||| || || ||| | || || | | || |||||| || |||||| |||| Sbjct 30694 AGCCTTTCCGCGAAACTCTC---GCTCCC---GTCAATCCACCGCAAGGCCCACCGTGCC 30641 Query 794527 TTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG 794586 || || ||| | |||||||| ||||| || |||| ||| | | |||||| | | Sbjct 30640 TTCTTAGCCACGCACGGCACCGTTTCGATAGCATGAAACAGGCGATTCTTCTCCTCAGAA 30581 Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 ||||||| || || || | || || ||| |||| |||||||| || || || ||| Sbjct 30580 TCCTTGATATAAGTCTCCAACAGAAGACTGTACATCTCGGAGTGGATATTCTCAATCGCG 30521 Query 794647 ATCTGGAAGCCATAAAA 794663 |||||||| || ||||| Sbjct 30520 ATCTGGAATCCGTAAAA 30504 Score = 129 bits (142), Expect = 9e-24 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| | ||||||||||| |||||||| || ||||| || || || || || || Sbjct 30496 GCCTCCGAGACTTGGACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCA 30437 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || ||||||||| ||||| ||||| || ||| ||||| ||||||| | || Sbjct 30436 TCAGAGGCGGCGAAGAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGG 30377 Query 796270 GAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGGCC 796329 |||||||| | || | ||| ||||||||||| || ||||||||||||||| Sbjct 30376 TTTTCCCAGTGGCGGATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCC 30317 Query 796330 TCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || || || |||||||||||||| || | |||| | |||||||||| Sbjct 30316 TCAGCTTTCTTGTACATCTCCCAGATTGATGGGTACTGAATGGGGAACA 30268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915223608595985