Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq189 95.1 1e-14 seq26 93.3 3e-14 seq185 87.8 1e-12 seq78 86.0 5e-12 seq93 84.2 2e-11 seq41 84.2 2e-11 >seq189 Length=529659 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || |||||||| |||| ||||||||||| || | ||| ||| | | Sbjct 461303 ATGCAAATCTTCGTCAAAACCCTAACCGGCAAAACCATAACTCTTGAAGTCGAGAGTTCC 461362 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | ||||| |||||| || |||||||| | || |||||| Sbjct 461363 GATACTATTGACAACGTAAAGGCCAAGATTCAAGACAAAGAAGGTATCCCTCCGGATCAA 461422 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || |||| ||| || ||||| | ||||| | | || | ||||| || || Sbjct 461423 CAGAGGCTAATTTTTGCTGGGAAACAATTAGAGGATGGTAGGACCCTTGCGGATTATAAT 461482 Query 107736 ATTCAAAAGGAGTCTAC 107752 || |||||||| || || Sbjct 461483 ATCCAAAAGGATTCCAC 461499 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || || || |||||||| || || || || || | || || ||| Sbjct 461531 ATGCAAATCTTCGTTAAGACTTTAACTGGAAAGACAATCACGCTTGAGGTTGAAAGCTCT 461590 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| |||||| || || ||||| | ||| |||||| Sbjct 461591 -GATACAATTGATAACGTTAAAGCCAAGATTCAGGACAAGGAAGGGATTCCCCCGGATCA 461649 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || ||| |||| || | | || | ||||| || || Sbjct 461650 GCAGAGGCTCATCTTTGCAGGGAAGCAGTTGGAAGAGGGGAGGACTCTTGCGGATTATAA 461709 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||||||||||||||| |||| |||| || | ||| |||| || Sbjct 461710 CATTCAAAAGGAGTCTACTCTGCATCTGGTACTGCGTTTGAGAGGCGG 461757 >seq26 Length=1968749 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||||||||| |||||| | || ||||| ||||| ||| | || ||| ||| | Sbjct 78241 ATGCAAATTTTTGTGAAAACTCTCACTGGCAAGACCATCACCCTTGAGGTGGAAAGCTCG 78300 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || ||| ||||| ||||| ||||| | ||| ||||| Sbjct 78301 -GATACTATTGATAATGTGAAAGCCAAGATCCAGGATAAGGAAGGGATCCCCCCAGATCA 78359 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || |||||||| ||||| | ||| | || || || || Sbjct 78360 GCAGAGGTTGATCTTTGCTGGCAAACAGCTTGAGGATGGACGAACCCTTGCTGATTATAA 78419 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| |||||||| || || | ||| |||| | | ||| |||| || Sbjct 78420 CATCCAAAAGGAATCCACTCTCCACTTGGTTCTACGTTTGAGAGGTGG 78467 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| || || ||||| || || || || |||||| | || ||| ||| Sbjct 78697 ATGCAGATTTTCGTGAAGACTTTGACTGGGAAGACTATTACCTTGGAGGTAGAGAGCTCT 78756 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | || || ||| || || ||||| ||| | ||| ||||| Sbjct 78757 -GACACCATCGATAATGTCAAGGCAAAAATCCAGGACAAAGAGGGCATCCCCCCAGATCA 78815 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||| ||||| | ||| || || ||||||||||| | || | || |||||||| Sbjct 78816 ACAGAGGCTTATCTTTGCTGGCAAGCAGCTGGAGGATGGACGCACTCTTGCTGACTACAA 78875 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 |||||| ||||||||||| | ||| ||||| || | ||||| || || Sbjct 78876 CATTCAGAAGGAGTCTACTCTTCACTTGGTGCTGCGCTTGCGTGGAGG 78923 >seq185 Length=543210 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || | ||||| || ||||| ||| | || |||| ||| Sbjct 498903 ATGCAGATCTTTGTGAAGACCCTCACAGGAAAGACCATCACCTTGGAGGTGGAGAGCTCT 498962 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || ||| ||||| || || |||||| | ||| || || Sbjct 498963 -GATACTATTGACAATGTGAAAGCCAAGATCCAAGACAAGGAAGGCATCCCCCCAGACCA 499021 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| || || ||||| || || | | || | || |||||||| Sbjct 499022 GCAGAGGTTGATTTTTGCTGGGAAGCAGCTTGAAGATGGGAGGACTCTTGCTGACTACAA 499081 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||| |||||||| || | ||| ||||| || | | || || |||| Sbjct 499082 CATTCAGAAGGAGTCAACCCTTCACTTGGTGCTGCGTCTCCGTGGAGGAA 499131 >seq78 Length=1009284 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| ||||| | || || ||||| || ||| | || |||| ||| | Sbjct 200887 ATGCAGATTTTTGTGAAAACCCTCACTGGAAAAACTATCACCTTGGAGGTGGAGAGCTCG 200828 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || || |||||| ||||| ||||| | || ||| || Sbjct 200827 -GATACTATTGATAACGTTAAGACAAAGATCCAAGATAAGGAAGGGATTCCACCGGACCA 200769 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | |||| ||| || |||||||||||||| | || | || |||||||| Sbjct 200768 GCAAAGGTTGATTTTTGCTGGAAAACAGCTGGAGGATGGTCGCACCCTTGCAGACTACAA 200709 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||| || || |||| ||||| Sbjct 200708 TATTCAGAAGGAATCAACTCTGCATTTGGTG 200678 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| | || || ||||| || ||| | || |||| ||| | Sbjct 220491 ATGCAGATATTTGTGAAAACCCTCACTGGAAAAACTATCACCTTGGAGGTGGAGAGCTCG 220432 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | || ||| |||||| ||||| ||||| | || ||| || Sbjct 220431 -GATACTATTGATAACGTCAAAACAAAGATCCAAGATAAGGAAGGGATTCCACCGGACCA 220373 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || | |||| ||| || |||||||||||||| | || | || |||||||| Sbjct 220372 GCAAAGGTTGATTTTTGCTGGAAAACAGCTGGAGGATGGTCGCACCCTTGCAGACTACAA 220313 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| ||||| || || |||| ||||| Sbjct 220312 TATTCAGAAGGAATCAACTCTGCATTTGGTG 220282 >seq93 Length=881566 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || ||||| || || ||||| || || ||| |||| ||| | Sbjct 481002 AAGATGCAGATCTTCGTGAAAACCTTGACGGGCAAGACAATAACCCTCGAGGTTGAGTCC 480943 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || ||| ||| | | || ||| |||||| || || ||||| | || ||| Sbjct 480942 TCAGACACTATCGACAATGTCAAAGCCAAGATTCAAGACAAGGAAGGTATCCCACCGGAC 480883 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 || ||| | || |||| || || |||||||| ||||| | | ||| | | |||||| Sbjct 480882 CAACAGCGTCTCATTTTCGCTGGAAAACAGCTCGAGGATGGCCGTACACTTTCTGACTAC 480823 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 ||||| || |||||||| || | ||| ||||| | | ||| | || ||| Sbjct 480822 AACATCCAGAAGGAGTCCACTCTCCACTTGGTGCTTCGCTTGAGGGGTGGA 480772 >seq41 Length=1573182 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||| || || ||| |||| || || ||||||||| | || |||| ||| Sbjct 840199 ATGCAGATTTTCGTGAAGACTCTAACTGGGAAGACCATTACCTTGGAGGTGGAGAGCTCT 840140 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| ||| | ||||| || ||| || || || || | || || || Sbjct 840139 -GACACTATCGATAATGTAAAGGCCAAAATTCAGGACAAGGAGGGGATCCCACCAGACCA 840081 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| || |||||||| || || | | ||| | || |||||||| Sbjct 840080 GCAGAGGTTGATTTTTGCTGGAAAACAGCTTGAAGATGGAAGGACACTTGCTGACTACAA 840021 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||| || |||||||| || | ||| ||||| | | |||| || |||| Sbjct 840020 CATACAGAAGGAGTCAACCCTTCACTTGGTGCTTCGGCTGCGTGGAGGAA 839971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398830058494735