Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq189 123 4e-23 seq461 89.7 8e-13 >seq189 Length=529659 Score = 123 bits (136), Expect = 4e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | ||||| |||| || ||||| || ||| |||| || || | || Sbjct 461304 TGCAAATCTTCGTCAAAACCCTAACCGGCAAAACCATAACTCTTGAAGTCGAGAGTTCCG 461363 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| | || ||||| || || ||| |||||||| || || || ||||||| Sbjct 461364 ATACTATTGACAACGTAAAGGCCAAGATTCAAGACAAAGAAGGTATCCCTCCGGATCAAC 461423 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || ||||||||||| ||| ||| || | | |||||||||| Sbjct 461424 AGAGGCTAATTTTTGCTGGGAAACAATTAGAGGATGGTAGGACCCTTGCGGATTATAATA 461483 Query 146212 TACAAAAAGAATCGAC 146227 | ||||| || || || Sbjct 461484 TCCAAAAGGATTCCAC 461499 >seq461 Length=207379 Score = 89.7 bits (98), Expect = 8e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || ||||| || || || || |||||| | || || || || | Sbjct 160640 TGCAGATTTTTGTGAAGACATTGACGGGGAAGACCATTACTCTGGAGGTGGAGAGTAGTG 160699 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | ||||| || || || || || || ||||||||||| || || | Sbjct 160700 ACACCATTGACAATGTCAAGGCGAAGATTCAGGACAAGGAGGGCATTCCACCGGACCAGC 160759 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 |||| || |||||||| || || || || || ||| || || || | |||||||||| Sbjct 160760 AAAGGCTGATTTTTGCTGGGAAGCAGTTGGAGGATGGAAGGACTTTGGCTGATTATAATA 160819 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACG 146245 | || ||||| || ||| | || | || ||||| Sbjct 160820 TCCAGAAAGAGTCTACTCTTCACCTTGTCTTACG 160853 Score = 84.2 bits (92), Expect = 3e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| |||||| | || || || || || || || |||||| | || || ||| | || Sbjct 160184 TGCAGATATTCGTCAAGACCTTGACCGGGAAGACCATTACTCTCGAGGTCGAAAGCAGCG 160243 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || | || || || ||||| ||| || ||||| || ||||| ||||||| Sbjct 160244 ACACCATCGACAACGTTAAGGCAAAAATTCAAGACAAGGAAGGGATCCCACCAGATCAAC 160303 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | || || || || |||||| | || ||| | | || || | |||||||||| Sbjct 160304 AACGTTTGATCTTCGCTGGGAAACAACTTGAGGATGGTCGGACTCTAGCTGATTATAATA 160363 Query 146212 TACAAAAAGAATCGAC 146227 | || || || ||||| Sbjct 160364 TTCAGAAGGAGTCGAC 160379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786071912625800