Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_023574.1 Length=128546 Score E Sequences producing significant alignments: (Bits) Value seq2164 172 5e-38 >seq2164 Length=27727 Score = 172 bits (190), Expect = 5e-38 Identities = 133/154 (86%), Gaps = 3/154 (2%) Strand=Plus/Plus Query 28233 CAATTAAAAGCAGAAATCAATAAAA-AATATCACTTAATGCTTGATaa-aaaaaTAATAT 28290 |||||||||| |||||| ||||||| ||||||| |||| |||| || | ||| | || Sbjct 2144 CAATTAAAAGTAGAAATAAATAAAAAAATATCATCTAATATTTGACAACGATAATTA-AT 2202 Query 28291 TTTGATATAATAATATGTATAGAAATAAAGGAGAACTAACACATGGTAGTTAAATTAACA 28350 |||| ||||||| ||| |||||||||||||||||||||||| |||||||| |||||||| Sbjct 2203 TTTGGTATAATAGTATATATAGAAATAAAGGAGAACTAACAAATGGTAGTCAAATTAACG 2262 Query 28351 CAAAAACAAGATGATTATCTTAAAACTTTTGGAA 28384 |||||||||| |||||||||| |||||||||||| Sbjct 2263 CAAAAACAAGCTGATTATCTTGAAACTTTTGGAA 2296 Score = 111 bits (122), Expect = 1e-19 Identities = 102/128 (80%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 27923 GAGCTAGTGGAAGAAGTAAAGGTAGAAAATCCAGTAGAAAGAACGAAAGAATCAACACAA 27982 || ||||||||| ||||||||| |||| |||| | |||| ||||||||||| |||| Sbjct 1674 GAACTAGTGGAAAAAGTAAAGGCTGAAACTCCAATCGAAACGACGAAAGAATCGGCACAG 1733 Query 27983 GATTTCTTAGACTTAACTaaaaaaaCAAGGAAAGGCAATAGAAAATGATTGAAAAATGGT 28042 | ||||||||||||| ||||| | | ||||||| | || ||||||||| ||| ||| | Sbjct 1734 GCTTTCTTAGACTTAGCTAAAGAGA-AAGGAAAAGTAACAGAAAATGAGTGATAAAAAAT 1792 Query 28043 ATGTTGTT 28050 | |||||| Sbjct 1793 ACGTTGTT 1800 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/225 (70%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 28507 AAAATGCTAAATGCTCTAATTAACGGTTATGAAGTTGATGAACCTAAATATAAATTTTAT 28566 |||||| | | ||| | |||||||||||||||||| ||||||||||| ||| |||||| Sbjct 2419 AAAATGGTTGAAGCTGTCATTAACGGTTATGAAGTTATTGAACCTAAATTTAAGTTTTAT 2478 Query 28567 ACATGTCGTGA----AACCTCATATCTGCCTTTATACTATTCTGGAAAGCATAATGCATT 28622 | | | ||| | | | ||| | ||||| ||| ||||| || ||| ||| Sbjct 2479 AACTTTTCTGATAGTAGCGGAGGAACTG-CATTATATTATGCTGGACAGTCTAAACAATT 2537 Query 28623 AACACTATGTGAAGATAAAGCTCTTGAATTTGAAAAAGGAAGTAAAGGATATTTAGCTTT 28682 |||| || || | | ||||||||| || || | || || | | |||| |||||| Sbjct 2538 AACAAAATTCGAGCAAGATGCTCTTGAAGTTAAAGAGGGGAGCGAGGAATATAAAGCTTT 2597 Query 28683 AGAATATTTAGGTTTTTGTAAAGAAAAAGCATGATAAAATCTTTT 28727 | ||||||||| | ||||| ||| ||||||| ||||||| Sbjct 2598 GTTAGCTTTAGGTTTCGTTGAAGAAGAAGTATGATAACATCTTTT 2642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 411174211802605