Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_024385.1 Length=28193 Score E Sequences producing significant alignments: (Bits) Value seq2164 179 7e-41 >seq2164 Length=27727 Score = 179 bits (198), Expect = 7e-41 Identities = 337/494 (68%), Gaps = 6/494 (1%) Strand=Plus/Minus Query 22624 TCTTTGATACGTTGTGGtttttttATAACCAACTAATACATCTTCTTTTTCTAAAATTTC 22683 ||| | ||| ||| |||| | |||||||||| || || || | ||||| | ||||| Sbjct 6363 TCTCTTATATGTTTTGGTCTGTTTATAACCACTAAAAACGTCATGCTTTTCAATTATTTC 6304 Query 22684 AACAGCTAGATTATACTTTATATCACTTACCTGTTTACTGTATAAATAGT---TCATTCG 22740 |||||||||||| |||| ||| | | |||| |||||||| | || || Sbjct 6303 TTTAGCTAGATTATATTTTAAATCTGAAATTTCTTTAGAATATAAATAATCTCTCTTT-- 6246 Query 22741 ATCATTGCCAAAACTATTGACTAACAACTTCAATTCGTCATCAACAGTTTTATTTTCTTT 22800 | ||| || ||| || | | ||||||||| |||||| || || |||||||| Sbjct 6245 -TTATTACCGAAAGAGTTAATCAGCAACTTCAAAAAGTCATCTGTTGTCTTGTTTTCTTT 6187 Query 22801 TTCTCTAATTTCAATAAACTCATCACGACTAACAATTAGCGTTTTTATCCATTCCCTGTC 22860 || |||| || ||||||| ||| |||||| || |||| ||||| || | ||| Sbjct 6186 CTCCTTAATCTCGGTAAACTCTGTACGTGAAACAATAAGGCTTTTAATCCACTCACGGTC 6127 Query 22861 TTGGTTTAAAACACGGTTAAACATATCAGTAATTGTTTTATCTAAGTCATTATAAACAAC 22920 ||| | ||| || | ||| | || || || |||||||| |||||| || Sbjct 6126 TTGAGAGATAACTCGTTCAAAAGCGTTGGTTATATCCTTGTCTAAGTCGTTATAATATAC 6067 Query 22921 ATCGATGCCGTTAATCATCAGTTCCGCAGTAATTGCACCGCCACCACCGAAGACATCGTA 22980 || | ||| || | || ||| | |||||||| ||||| || ||||||| ||||| Sbjct 6066 TTCTAAGCCATTTAAAATACATTCGGATGTAATTGCTCCGCCTCCTCCGAAGATGTCGTA 6007 Query 22981 AACTGTCTTATCCGCTCCAAAATTCTGCTTGATGATCTCTACAATCTTTTTGCTAATTTT 23040 | | ||| || | ||||| ||||| ||||| ||||| || || || ||||| || || Sbjct 6006 TATCGGCTTGTCTGTGCCAAAGTTCTGTTTGATAATCTCAACTATTTTCTTGCTTATCTT 5947 Query 23041 CTTTTTGCTACCAACATAAGGTAAACCAACTGGCTTTCCTTTGCGGATTTTCTTTTCGTC 23100 || ||||| || || ||||| |||| || || ||||| | ||||||||| ||||| Sbjct 5946 TTTCTTGCTTCCTTGGTATGGTAATCCAATAGGTTTACCTTTTCTGATTTTCTTCTCGTC 5887 Query 23101 TAGTGTCAGCATTA 23114 || | ||||||| Sbjct 5886 TAAACTAAGCATTA 5873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 90089183362220