Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq26 91.5 1e-13 seq461 86.0 6e-12 >seq26 Length=1968749 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||||||||| ||||| || | | ||||| || |||||||||||||| | || Sbjct 78918 ACGCAAGCGCAGCACCAAGTGAAGAGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGAGT 78859 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || ||| || ||||| || || | | |||| || | |||||||||||| || ||||| Sbjct 78858 GCGTCCATCCTCCAGCTGCTTGCCAGCAAAGATAAGCCTCTGTTGATCTGGGGGGATGCC 78799 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||| || |||||| || | | || | || || | ||| || || | Sbjct 78798 CTCTTTGTCCTGGATTTTTGCCTTGACATTATCGATGGTGTCAGAGCTCTCTACCTCCAA 78739 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || ||||||| ||| || | ||||||||||||| Sbjct 78738 GGTAATAGTCTTCCCAGTCAAAGTCTTCACGAAAATCTGCATG 78696 >seq461 Length=207379 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 131932 CTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATA 131991 ||| || ||||| ||||| ||| || || || |||||| |||||||| |||| | Sbjct 160146 CTCCTTCTGAATATTGTAATCGGCCAAAGTTCGGCCATCTTCCAGCTGTTTTCCGGCGAA 160087 Query 131992 GATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTG 132051 |||||||||||||||||| || || |||||||| || || ||| || || | | Sbjct 160086 GATTAGACGCTGTTGATCCGGTGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTGACGTT 160027 Query 132052 TTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTAT 132111 || | || ||| | |||||| || | || | || || || || || ||||| | Sbjct 160026 GTCGATGGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTTTTCAC 159967 Query 132112 GAAAATCTGCAT 132123 ||| |||||||| Sbjct 159966 GAAGATCTGCAT 159955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476553917291400