Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq549 237 2e-56 seq435 230 3e-54 >seq549 Length=172529 Score = 237 bits (262), Expect = 2e-56 Identities = 387/548 (71%), Gaps = 12/548 (2%) Strand=Plus/Plus Query 1455731 GATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTA 1455789 || ||||| |||| || ||| |||||||||| | |||| || ||||| ||||| Sbjct 30246 GAAAACCCAGACCGGTTCTGTA-TGTTCCCCATTCAGTACCCATCAATCTGGGAGATGTA 30304 Query 1455790 CCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGG 1455849 | | |||| | ||||||||||||||||| || ||||||||||| ||| | || | Sbjct 30305 CAAGAAAG-CTGAGGCCTCCTTTTGGACTGCTGAGGAGGTCGATCTCTCGTCGGATATCC 30363 Query 1455850 TCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTT 1455909 |||||||| |||| ||||||| || |||||| || ||||| ||||| | Sbjct 30364 GCCACTGGGAAAACCTGACTCCCGACGAGAAGCACTTCATCTCTCATGTCCTTGCCTTCT 30423 Query 1455910 TTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTC 1455969 | ||||||| ||||| || || ||| || || ||||| || || |||||||||||| Sbjct 30424 T-CGCCGCCTCTGATGGGATTGTCCTCGAAAATCTCGCCGGGCGTTTCATGAAAGAGGTC 30482 Query 1455970 CAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCT 1456029 ||| | | ||||| ||| |||||||| ||||||||||| || || || |||||||| Sbjct 30483 CAAGTCTCGGAGGCGCGTGCTTTTTACGGATTCCAGATCGCGATTGAGAATATCCACTCC 30542 Query 1456030 GAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTC 1456089 || | ||| || ||| | || || || ||||||| | | |||||| | | ||| Sbjct 30543 GAGATGTACAGTCTTCTGTTGGAGACTTATATCAAGGATTCTGAGGAGAAGAATCGCCTG 30602 Query 1456090 TTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGG 1456149 |||| || ||||| |||||||||| ||| || ||||| ||||| || |||| Sbjct 30603 TTTCATGCTATCGAAACGGTGCCGTGCGTGGCTAAGAAGGCACGGTGGGCCTTGCGGTGG 30662 Query 1456150 ATCAACAAGGAGGGCCTCGACACTTT-GCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAG 1456207 || || |||| ||| | ||| || || |||| || | ||||| |||| || Sbjct 30663 ATTGAC-GGGAG-----CGAGAGTTTCGCGGAAAGGCTAGTTGCTTTTGCTTGCGTGGAA 30716 Query 1456208 GGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATG 1456267 || || ||||||||||| ||||| || || || |||||| | || ||||| || | ||| Sbjct 30717 GGGATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGTTAAAAAAGCGTGGGTTGATG 30776 Query 1456268 CCCGGTCT 1456275 || || || Sbjct 30777 CCGGGGCT 30784 >seq435 Length=220439 Score = 230 bits (254), Expect = 3e-54 Identities = 401/566 (71%), Gaps = 18/566 (3%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGC-GATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTA-CCAG 1455772 ||||| || || ||| || ||||| |||| || ||| ||||||| || | || ||| Sbjct 105239 GAGCCCCTCCT-CGCTGAAAACCCAGACCGATTCTGTA-TGTTCCCAATTCAATATCCAT 105182 Query 1455773 CGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGA 1455832 | || ||||| |||||| || ||||| || ||||| |||||||| || || |||||||| Sbjct 105181 CA-ATCTGGGAGATGTAC-AAGAAGGCTGAAGCCTCGTTTTGGACGGCTGAAGAGGTCGA 105124 Query 1455833 CCTCGGCGCCGA-CACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCA 1455891 ||| | || | | ||| |||||| |||| |||||| || ||||| Sbjct 105123 TCTCTCTTCAGATCTCCGTC-ACTGGGAAAACCTGACTCCTGACGAGAAACACTTCATTT 105065 Query 1455892 AGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGC 1455951 |||||||| ||||| || ||| ||| ||||| ||||| |||||| | ||||| Sbjct 105064 CTCACGTCCTTGCCTTCTT-CGCTGCCTCTGATGGAATCGTCCTCGAGAATATCGCCGGG 105006 Query 1455952 CGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCC 1456011 || || |||||||| |||||| | | ||||| ||| || ||||||||||||||||| Sbjct 105005 CGTTTCATGAAAGAAGTCCAAGTCTCGGAGGCGCGTGCTTTCTACGGGTTCCAGATCGCG 104946 Query 1456012 ATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCG 1456071 || || || |||||||| || | ||| || || | || |||||| ||||||| | Sbjct 104945 ATTGAGAATATCCACTCGGAGATGTACAGTCTTTTGTTGGAGACCTACATCAAGGATTCT 104886 Query 1456072 GTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCC 1456131 |||||| ||| || |||| ||||| || |||||||||| ||| || ||||| Sbjct 104885 ACTGAGAAGAACCGTCTGTTTCATGCCATTGAGACGGTGCCGTGTGTGGCTAAGAAGGCG 104826 Query 1456132 GACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACA-CTTTGCCGAGCGGCTCGTC 1456190 || ||||| | |||||| | | ||||| ||| | ||||| ||| || | || Sbjct 104825 GAGTGGGCTTTACGGTGGAT--AGACGGAGG----CGAGAGTTTTGCGGAGAGGTTAATC 104772 Query 1456191 GGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTC 1456249 | ||||| |||| || || || ||||||||||| ||||| || || || |||||||| Sbjct 104771 GCATTTGCTTGCGTGGAAGGGATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGCTA 104712 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || || || || || ||||| || || Sbjct 104711 AAAAAACGTGGGCTAATGCCAGGCCT 104686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7176883815577630