Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq435 210 3e-49 seq549 188 1e-42 seq23 140 4e-28 seq14 131 2e-25 seq131 87.8 2e-12 >seq435 Length=220439 Score = 210 bits (232), Expect = 3e-49 Identities = 590/904 (65%), Gaps = 4/904 (0%) Strand=Plus/Plus Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385 ||||| || || || || | ||||||||| ||||| || || |||| ||| ||||| Sbjct 104338 TTTTGATACTCCCCGACTCTTTTCTCGAAGAAATTTGTCTTCCCTTGCAAGGATATCAAC 104397 Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445 ||||| ||||||| ||||||| |||| || || | || | | | | Sbjct 104398 TCCATCCAATCAAATGGATTAGCCACATTGTACACCTTCCCGCACCCAAGCGCACCCAAC 104457 Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505 | ||||| || ||||| || || || |||||| ||| | |||||| || | | Sbjct 104458 AGCCTATCAGCTACAAACTCAATATACTGACTCATCAATTCCCCATTCATCCCCACCAAA 104517 Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565 |||||| | ||| | |||||| | || || || || ||||| | | |||| Sbjct 104518 GCGCATGGTAGCGAGTCCACCACAAACTCCCTCTCTATATCCACAGCCTCCTTCACTATC 104577 Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATG--TTTAAACATTAAGCAGGCGA 39623 | || ||| |||||| || | | || | | |||| | | ||| |||| Sbjct 104578 CCCTTCACGCGCTCCTCACTCAGTTTCTTCCTCAACAGGCTGTAAAGA--AGGCACGCGA 104635 Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683 | |||||||| || || ||||||| || || ||||| || || || || || |||| Sbjct 104636 AATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGGCCTGGCA 104695 Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTT 39743 |||| ||||| ||||| ||||||||||| ||| |||| || || || || || |||| Sbjct 104696 TTAGCCCACGTTTTTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTT 104755 Query 39744 CTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTTCT 39803 | || |||||||| | | ||||| | |||| | | ||||||| Sbjct 104756 CCACGCAAGCAAATGCGATTAACCTCTCCGCAAAACTCTCGCCTCCGTCTATCCACCGTA 104815 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 ||||| || || ||||| ||||| |||| || || || |||| ||| ||| | Sbjct 104816 AAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACAGACGGT 104875 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 || ||| | ||| || | || || || | || ||||| ||||| || || |||| Sbjct 104876 TCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTCCGAGTGGA 104935 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 | || |||||||| ||||| || ||||| ||| | || || | | ||| || ||| Sbjct 104936 TATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGGACTTCTT 104995 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 || | | || | ||| || || ||||||||| || || || || || | Sbjct 104996 TCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCAGCGAAGAAGGCAA 105055 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 || || ||| || | ||| || || || |||| || | ||||| | || |||| Sbjct 105056 GGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGACGGAGATCTG 105115 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163 || | ||| || |||||||| ||||||||||| || || ||||| |||||||| | || Sbjct 105116 AAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAGCCTTCTTGTACATCTCCC 105175 Query 40164 ATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATGG 40223 | || ||||||| ||||| || ||| |||| | ||| |||| || |||| || Sbjct 105176 AGATTGATGGATATTGAATTGGGAACATACAGAATCGGTCTGGGTTTTCAGCGAGGAGGG 105235 Query 40224 GTTC 40227 | || Sbjct 105236 GCTC 105239 >seq549 Length=172529 Score = 188 bits (208), Expect = 1e-42 Identities = 411/613 (67%), Gaps = 2/613 (0%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| ||||| |||||||| || || ||||||| || || ||||| ||||| || || Sbjct 30842 GCACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAG 30783 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| | ||||||||||| | ||||||||| ||| |||| || || || || Sbjct 30782 CCCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAA 30723 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT-TGTATCATTATGTA 39794 || ||||| || ||||| ||||| || || || || |||| | || | | Sbjct 30722 TATCCCTTCCACGCAAGCAAAAGCAACTAGCCTTTCCGCGAAACTCTCGCTCCCG-TCAA 30664 Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854 ||||| | ||||| || ||||| || || |||| ||||| ||||||| || Sbjct 30663 TCCACCGCAAGGCCCACCGTGCCTTCTTAGCCACGCACGGCACCGTTTCGATAGCATGAA 30604 Query 39855 AGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTT 39914 | || || || || ||| ||| || | ||| || || | | ||||| ||||| | Sbjct 30603 ACAGGCGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCT 30544 Query 39915 CTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTT 39974 | || ||||| || |||||||| ||||| |||||||||||| | || || | | || Sbjct 30543 CGGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTT 30484 Query 39975 GTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAA 40034 | |||||| || | | || | |||||| || || |||||| ||||| | Sbjct 30483 GGACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGA 30424 Query 40035 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCAT 40094 | || || | ||||| || || | || || ||||| |||| || | ||||| Sbjct 30423 AGAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGC 30364 Query 40095 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGT 40154 |||||| || | ||| || || ||||| |||||||| || ||||| || || |||| Sbjct 30363 GGATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGT 30304 Query 40155 ACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTG 40214 |||| | ||| || | || || || || || ||| || | | ||| |||| | Sbjct 30303 ACATCTCCCAGATTGATGGGTACTGAATGGGGAACATACAGAACCGGTCTGGGTTTTCAG 30244 Query 40215 CAAGGATGGGTTC 40227 | |||| |||||| Sbjct 30243 CCAGGAGGGGTTC 30231 >seq23 Length=2045696 Score = 140 bits (154), Expect = 4e-28 Identities = 154/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | |||||| | ||| | || | || ||| |||| ||| || Sbjct 906677 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCC 906618 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||||||| |||||||||||| | || || || || || ||| Sbjct 906617 ATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 906558 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| |||||||| || |||| ||| | |||||| |||||||| |||||||| Sbjct 906557 TACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 906498 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 || || || ||||||||| ||||| Sbjct 906497 TCCTTCAATACTATCATCTTTCATG 906473 >seq14 Length=2767599 Score = 131 bits (144), Expect = 2e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 |||||| ||||| | || | |||||| | ||| | || |||| ||| |||| || || Sbjct 700398 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAACGCC 700457 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||||||| | |||||||| ||| |||||||||||| | || || || || ||| Sbjct 700458 ATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGA 700517 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| ||||||||||| |||| ||| | |||||| |||||||| |||||||| Sbjct 700518 TACACCGATTCCTCCTGCTGATTTACTGATAATAGCACACTCCTTCAATGTATCATATAT 700577 Query 69930 ACCCTCTATGCTATCATCTATCATG 69954 || || || ||||||||| ||||| Sbjct 700578 TCCTTCAATACTATCATCTTTCATG 700602 Score = 89.7 bits (98), Expect = 7e-13 Identities = 162/235 (69%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 ||||| ||||| || | || ||||| || |||||||||||| | ||| | || || | Sbjct 700777 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCGCTGAGACATCAAATGG 700836 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| |||||||| || ||||| | |||||||| | || || | ||||| | Sbjct 700837 TACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATCAGC 700896 Query 70111 ATATGCTGAGGTCGTTCTAC--CGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 || |||||||| | ||| || | ||| | | | |||| ||||| ||| |||| | Sbjct 700897 ATGTGCTGAGGCCTTTCCACAACCTTTCCT--TGGACCTTCAGGAGGTAGGATCTTTCAA 700954 Query 70169 GAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGA 70223 | || || || ||||| || | || |||||| | || || || || |||| Sbjct 700955 GCGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAGATGATCTCAGA 701009 >seq131 Length=684295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 |||| ||||||| || ||||| || ||| ||||| | ||||||| || | |||| || Sbjct 385981 CTCTCTTTCATACTGGGTATACAGTTTTTCAAATTCTTGTCCCCAACAATTAGCCAAACC 385922 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 ||| ||| | || || | ||| ||||| |||||| | ||||| || ||| || Sbjct 385921 TGGAGCCTCACTAGGGCAAAACAAAGACCATTTGTCATCACCTCGAACTCTTTCCATGAA 385862 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 ||||| |||||||||||||| | || | |||| | || || |||||| Sbjct 385861 GAGATCAGGAATCCAAAGAGCAAGGAATAAGTCTCGAGCTCGATGTTCTTC 385811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686826242148600