Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12]
9,615 sequences; 496,032,534 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq435 210 3e-49
seq549 188 1e-42
seq23 140 4e-28
seq14 131 2e-25
seq131 87.8 2e-12
>seq435
Length=220439
Score = 210 bits (232), Expect = 3e-49
Identities = 590/904 (65%), Gaps = 4/904 (0%)
Strand=Plus/Plus
Query 39326 TTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTT 39385
||||| || || || || | ||||||||| ||||| || || |||| ||| |||||
Sbjct 104338 TTTTGATACTCCCCGACTCTTTTCTCGAAGAAATTTGTCTTCCCTTGCAAGGATATCAAC 104397
Query 39386 TCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATC 39445
||||| ||||||| ||||||| |||| || || | || | | | |
Sbjct 104398 TCCATCCAATCAAATGGATTAGCCACATTGTACACCTTCCCGCACCCAAGCGCACCCAAC 104457
Query 39446 AATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGT 39505
| ||||| || ||||| || || || |||||| ||| | |||||| || | |
Sbjct 104458 AGCCTATCAGCTACAAACTCAATATACTGACTCATCAATTCCCCATTCATCCCCACCAAA 104517
Query 39506 TTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATC 39565
|||||| | ||| | |||||| | || || || || ||||| | | ||||
Sbjct 104518 GCGCATGGTAGCGAGTCCACCACAAACTCCCTCTCTATATCCACAGCCTCCTTCACTATC 104577
Query 39566 GATGTTACTACCTCATCACTCGGTGGATGCAATAAATG--TTTAAACATTAAGCAGGCGA 39623
| || ||| |||||| || | | || | | |||| | | ||| ||||
Sbjct 104578 CCCTTCACGCGCTCCTCACTCAGTTTCTTCCTCAACAGGCTGTAAAGA--AGGCACGCGA 104635
Query 39624 AGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCA 39683
| |||||||| || || ||||||| || || ||||| || || || || || ||||
Sbjct 104636 AATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGGCCTGGCA 104695
Query 39684 TTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTT 39743
|||| ||||| ||||| ||||||||||| ||| |||| || || || || || ||||
Sbjct 104696 TTAGCCCACGTTTTTTTAGCCAAAATATCGCACAAAAACTCCCCGAGAAAAATATCCCTT 104755
Query 39744 CTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGTATCCACTTCT 39803
| || |||||||| | | ||||| | |||| | | |||||||
Sbjct 104756 CCACGCAAGCAAATGCGATTAACCTCTCCGCAAAACTCTCGCCTCCGTCTATCCACCGTA 104815
Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863
||||| || || ||||| ||||| |||| || || || |||| ||| ||| |
Sbjct 104816 AAGCCCACTCCGCCTTCTTAGCCACACACGGCACCGTCTCAATGGCATGAAACAGACGGT 104875
Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923
|| ||| | ||| || | || || || | || ||||| ||||| || || ||||
Sbjct 104876 TCTTCTCAGTAGAATCCTTGATGTAGGTCTCCAACAAAAGACTGTACATCTCCGAGTGGA 104935
Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983
| || |||||||| ||||| || ||||| ||| | || || | | ||| || |||
Sbjct 104936 TATTCTCAATCGCGATCTGGAACCCGTAGAAAGCACGCGCCTCCGAGACTTGGACTTCTT 104995
Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043
|| | | || | ||| || || ||||||||| || || || || || |
Sbjct 104996 TCATGAAACGCCCGGCGATATTCTCGAGGACGATTCCATCAGAGGCAGCGAAGAAGGCAA 105055
Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103
|| || ||| || | ||| || || || |||| || | ||||| | || ||||
Sbjct 105056 GGACGTGAGAAATGAAGTGTTTCTCGTCAGGAGTCAGGTTTTCCCAGTGACGGAGATCTG 105115
Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163
|| | ||| || |||||||| ||||||||||| || || ||||| |||||||| | ||
Sbjct 105116 AAGAGAGATCGACCTCTTCAGCCGTCCAAAACGAGGCTTCAGCCTTCTTGTACATCTCCC 105175
Query 40164 ATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTGCAAGGATGG 40223
| || ||||||| ||||| || ||| |||| | ||| |||| || |||| ||
Sbjct 105176 AGATTGATGGATATTGAATTGGGAACATACAGAATCGGTCTGGGTTTTCAGCGAGGAGGG 105235
Query 40224 GTTC 40227
| ||
Sbjct 105236 GCTC 105239
>seq549
Length=172529
Score = 188 bits (208), Expect = 1e-42
Identities = 411/613 (67%), Gaps = 2/613 (0%)
Strand=Plus/Minus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
||| ||||| |||||||| || || ||||||| || || ||||| ||||| || ||
Sbjct 30842 GCACGCGAAATCACAATGAAGCCCTTCATCTCGCGAGATCAACTCGTTCGAAAAGGTTAG 30783
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735
|| ||||| | ||||||||||| | ||||||||| ||| |||| || || || ||
Sbjct 30782 CCCCGGCATCAACCCACGCTTTTTTAACCAAAATATCGCACAAAAACTCCCCGAGAAAAA 30723
Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACT-TGTATCATTATGTA 39794
|| ||||| || ||||| ||||| || || || || |||| | || | |
Sbjct 30722 TATCCCTTCCACGCAAGCAAAAGCAACTAGCCTTTCCGCGAAACTCTCGCTCCCG-TCAA 30664
Query 39795 TCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAA 39854
||||| | ||||| || ||||| || || |||| ||||| ||||||| ||
Sbjct 30663 TCCACCGCAAGGCCCACCGTGCCTTCTTAGCCACGCACGGCACCGTTTCGATAGCATGAA 30604
Query 39855 AGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTT 39914
| || || || || ||| ||| || | ||| || || | | ||||| ||||| |
Sbjct 30603 ACAGGCGATTCTTCTCCTCAGAATCCTTGATATAAGTCTCCAACAGAAGACTGTACATCT 30544
Query 39915 CTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTT 39974
| || ||||| || |||||||| ||||| |||||||||||| | || || | | ||
Sbjct 30543 CGGAGTGGATATTCTCAATCGCGATCTGGAATCCGTAAAAAGCACGCGCCTCCGAGACTT 30484
Query 39975 GTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAA 40034
| |||||| || | | || | |||||| || || |||||| ||||| |
Sbjct 30483 GGACCTCTTTCATGAAACGCCCGGCGAGATTTTCGAGGACAATCCCATCAGAGGCGGCGA 30424
Query 40035 AAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCAT 40094
| || || | ||||| || || | || || ||||| |||| || | |||||
Sbjct 30423 AGAAGGCAAGGACATGAGAGATGAAGTGCTTCTCGTCGGGAGTCAGGTTTTCCCAGTGGC 30364
Query 40095 TGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGT 40154
|||||| || | ||| || || ||||| |||||||| || ||||| || || ||||
Sbjct 30363 GGATATCCGACGAGAGATCGACCTCCTCAGCAGTCCAAAAGGAGGCCTCAGCTTTCTTGT 30304
Query 40155 ACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGATTTTTTG 40214
|||| | ||| || | || || || || || ||| || | | ||| |||| |
Sbjct 30303 ACATCTCCCAGATTGATGGGTACTGAATGGGGAACATACAGAACCGGTCTGGGTTTTCAG 30244
Query 40215 CAAGGATGGGTTC 40227
| |||| ||||||
Sbjct 30243 CCAGGAGGGGTTC 30231
>seq23
Length=2045696
Score = 140 bits (154), Expect = 4e-28
Identities = 154/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| ||||| | || | |||||| | ||| | || | || ||| |||| ||| ||
Sbjct 906677 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCGCAACATTGGAACAATGCC 906618
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||||||| | |||||||||||| |||||||||||| | || || || || || |||
Sbjct 906617 ATTAGATGTCCCATTTGTTCCACGAATATAACTTCCAGTGGCACGGATGTTGTGAACAGA 906558
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
|| ||| |||||||| || |||| ||| | |||||| |||||||| ||||||||
Sbjct 906557 TACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCCTTCAATGTATCATATAT 906498
Query 69930 ACCCTCTATGCTATCATCTATCATG 69954
|| || || ||||||||| |||||
Sbjct 906497 TCCTTCAATACTATCATCTTTCATG 906473
>seq14
Length=2767599
Score = 131 bits (144), Expect = 2e-25
Identities = 152/205 (74%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809
|||||| ||||| | || | |||||| | ||| | || |||| ||| |||| || ||
Sbjct 700398 TCCTCCTTGATCAACATAGCGGGCAGTATCATTGAACACCCTCAACATTGGAACAACGCC 700457
Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869
||||||| | |||||||| ||| |||||||||||| | || || || || |||
Sbjct 700458 ATTAGATGTCCCATTTGTCCCACGAATATAACTTCCAGTGGCACGGATGTTGTGGGCAGA 700517
Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929
|| ||| ||||||||||| |||| ||| | |||||| |||||||| ||||||||
Sbjct 700518 TACACCGATTCCTCCTGCTGATTTACTGATAATAGCACACTCCTTCAATGTATCATATAT 700577
Query 69930 ACCCTCTATGCTATCATCTATCATG 69954
|| || || ||||||||| |||||
Sbjct 700578 TCCTTCAATACTATCATCTTTCATG 700602
Score = 89.7 bits (98), Expect = 7e-13
Identities = 162/235 (69%), Gaps = 4/235 (2%)
Strand=Plus/Plus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
||||| ||||| || | || ||||| || |||||||||||| | ||| | || || |
Sbjct 700777 GTTCCAGCATTGAAAAGGGTGGGAGAAGCATGAGTGAACCATCGCTGAGACATCAAATGG 700836
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|| |||| |||||||| || ||||| | |||||||| | || || | ||||| |
Sbjct 700837 TACGTTTTGATAGCTGAATCAATATCATCTTTGTGAATTCCAACAGCAACCCTCATCAGC 700896
Query 70111 ATATGCTGAGGTCGTTCTAC--CGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168
|| |||||||| | ||| || | ||| | | | |||| ||||| ||| |||| |
Sbjct 700897 ATGTGCTGAGGCCTTTCCACAACCTTTCCT--TGGACCTTCAGGAGGTAGGATCTTTCAA 700954
Query 70169 GAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACAGA 70223
| || || || ||||| || | || |||||| | || || || || ||||
Sbjct 700955 GCGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCCCGATCATAGATGATCTCAGA 701009
>seq131
Length=684295
Score = 87.8 bits (96), Expect = 2e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548
|||| ||||||| || ||||| || ||| ||||| | ||||||| || | |||| ||
Sbjct 385981 CTCTCTTTCATACTGGGTATACAGTTTTTCAAATTCTTGTCCCCAACAATTAGCCAAACC 385922
Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608
||| ||| | || || | ||| ||||| |||||| | ||||| || ||| ||
Sbjct 385921 TGGAGCCTCACTAGGGCAAAACAAAGACCATTTGTCATCACCTCGAACTCTTTCCATGAA 385862
Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659
||||| |||||||||||||| | || | |||| | || || ||||||
Sbjct 385861 GAGATCAGGAATCCAAAGAGCAAGGAATAAGTCTCGAGCTCGATGTTCTTC 385811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686826242148600
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