Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_027341.1 Length=130008 Score E Sequences producing significant alignments: (Bits) Value seq6334 289 2e-73 seq2164 210 2e-49 >seq6334 Length=2458 Score = 289 bits (320), Expect = 2e-73 Identities = 251/316 (79%), Gaps = 44/316 (14%) Strand=Plus/Plus Query 52018 TGGCATATAATAACAGGATATAGTGTTAATGGTAGCATGCGTGTTTTGGGAACATGTAGT 52077 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2115 TGGCATATAGTAACAGGATATAGTGTTAATGGTAGCATGCGTGTTTTGGGAACATGTAGT 2174 Query 52078 GTTGGTTCGAGTCCAGCTATCCTGATGAGTGGTGTATAGTCCATATATGAAGTGCTAAGC 52137 ||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||| Sbjct 2175 GTTGGTTCGAGTCCAGCTATCCTGATGAGTGGTGTATAGTCCATAGACGAAGTGTTAAGC 2234 Query 52138 TATTGCGCAGTACCTTGGCACAACTATACAAGAACCATATTGAACATAACTGGTGCATGG 52197 || |||||||||||||| | |||||||||||| || Sbjct 2235 TA-------------TGGCACAACTATAC--------------AGATAACTGGTGCACGG 2267 Query 52198 TTATTAGGATATGGGGTCAGTTAACGGAAGACCTAGTGTATTAAAGTGTCACAGGCTCAA 52257 |||| |||| ||||| ||| ||||||||||||||||||||||||| || Sbjct 2268 TTAT-----------ATCAGCTAACGAAAGTCCTAGTGTATTAAAGTGTCACAGGCATAA 2316 Query 52258 TTAAGTGACAGCTGGTTAGAGTAATTGGAGGGATACGGATAGCAACCGTGTAGGGCTCGA 52317 |||||||||||||||||||||||| ||| ||| || | |||||||| |||| Sbjct 2317 CTAAGTGACAGCTGGTTAGAGTAAT--AAGGTGTAC---TAAC-GTGGTGTAGGGTTCGA 2370 Query 52318 TTCCCTACTGCTCTAT 52333 |||||||||||||||| Sbjct 2371 TTCCCTACTGCTCTAT 2386 >seq2164 Length=27727 Score = 210 bits (232), Expect = 2e-49 Identities = 364/520 (70%), Gaps = 43/520 (8%) Strand=Plus/Plus Query 27237 CAATTAAAAGCAGaaatcaataaaaaa-tatcacttaatgcttgataaaaa-aataatat 27294 |||||||||| |||||| ||||||||| ||||| |||| |||| || | ||| | || Sbjct 2144 CAATTAAAAGTAGAAATAAATAAAAAAATATCATCTAATATTTGACAACGATAATTA-AT 2202 Query 27295 tttgatataataatatatatagaaataaaGGAGAACTAACACATGGTAGTTAAATTAACA 27354 |||| ||||||| |||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 2203 TTTGGTATAATAGTATATATAGAAATAAAGGAGAACTAACAAATGGTAGTCAAATTAACG 2262 Query 27355 CAAAAACAAGCTGATTATCTTAAAACTTTTGGAA-----------GACa-----aaaaaa 27398 ||||||||||||||||||||| |||||||||||| || | |||||| Sbjct 2263 CAAAAACAAGCTGATTATCTTGAAACTTTTGGAAACCTTGAAGATGAAATAAACAAAAAA 2322 Query 27399 CTTG-GCTTTCTATTATATTTCTCGTTGGGGTTGGGATTGTCTTCTTAAAGATGGTACag 27457 | | |||| | | | || |||||| |||| ||| ||| | | Sbjct 2323 CGAGCGCTT--TGTCACATCACTCGTT----TTGG----------TTATGGATACAATTG 2366 Query 27458 aaaaaacttacaaagataacgaagaaaaaccatttaatcttgatgaaaaagaaaaaatga 27517 | | | | | || | ||| | | || | | || | || || |||||| Sbjct 2367 GATAGGCGGCGATAAATGTCCAAGTAGTGCTTTTGAGTGTT-ACGAGCAATTGAAAATGG 2425 Query 27518 taaaTGCTCTAATTAACGGTTATGAAGTTGATGAACCTAAATATAAATTTTATAATTTTT 27577 | | ||| | |||||||||||||||||| ||||||||||| ||| |||||||| |||| Sbjct 2426 TTGAAGCTGTCATTAACGGTTATGAAGTTATTGAACCTAAATTTAAGTTTTATAACTTTT 2485 Query 27578 CTGATATTACCAGCGTTAGAAGATTATATTATACAGGGAAAAATAGACAATTCACTGAAA 27637 |||||| || | | | | |||||||||| | || | || |||||| || ||| Sbjct 2486 CTGATAGTAGCGGAGGAACTGCATTATATTATGCTGGACAGTCTAAACAATTAAC--AAA 2543 Query 27638 ATT--ATTTTGAAGGTAAAGATATTGAAAAGGATAGCGTTGAATATTTAGCTTTGGAAAG 27695 ||| | || | | || || || ||| |||| |||||| ||||||| | Sbjct 2544 ATTCGAGCAAGATGCTCTTGAAGTTAAAGAGGGGAGCGAGGAATATAAAGCTTTGTTAGC 2603 Query 27696 TTTAGGCTTTCG-TAAAGAAGAAGTATGATAACATCTTTT 27734 |||||| ||||| | ||||||||||||||||||||||||| Sbjct 2604 TTTAGG-TTTCGTTGAAGAAGAAGTATGATAACATCTTTT 2642 Score = 113 bits (124), Expect = 4e-20 Identities = 106/134 (79%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 26921 GATGGTGAGCTAGTGGAAGAAGTAAAGGTAGAAAATCCAGTAGAAAGAACGAAAGAATCA 26980 ||| | || ||||||||| ||||||||| |||| |||| | |||| ||||||||||| Sbjct 1668 GATAGCGAACTAGTGGAAAAAGTAAAGGCTGAAACTCCAATCGAAACGACGAAAGAATCG 1727 Query 26981 ACACAAGATTTCTTAGACTTAACTaaaaaaaCAAGGAAAGGCAATAGAAAATGATTGAAA 27040 |||| | ||||||||||||| ||||| | | ||||||| | || ||||||||| ||| | Sbjct 1728 GCACAGGCTTTCTTAGACTTAGCTAAAGAGA-AAGGAAAAGTAACAGAAAATGAGTGATA 1786 Query 27041 AATGGTATGTTGTT 27054 || || |||||| Sbjct 1787 AAAAATACGTTGTT 1800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415852063574535