Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12]
9,615 sequences; 496,032,534 total letters
Query= NC_027341.1
Length=130008
Score E
Sequences producing significant alignments: (Bits) Value
seq6334 289 2e-73
seq2164 210 2e-49
>seq6334
Length=2458
Score = 289 bits (320), Expect = 2e-73
Identities = 251/316 (79%), Gaps = 44/316 (14%)
Strand=Plus/Plus
Query 52018 TGGCATATAATAACAGGATATAGTGTTAATGGTAGCATGCGTGTTTTGGGAACATGTAGT 52077
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2115 TGGCATATAGTAACAGGATATAGTGTTAATGGTAGCATGCGTGTTTTGGGAACATGTAGT 2174
Query 52078 GTTGGTTCGAGTCCAGCTATCCTGATGAGTGGTGTATAGTCCATATATGAAGTGCTAAGC 52137
||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||
Sbjct 2175 GTTGGTTCGAGTCCAGCTATCCTGATGAGTGGTGTATAGTCCATAGACGAAGTGTTAAGC 2234
Query 52138 TATTGCGCAGTACCTTGGCACAACTATACAAGAACCATATTGAACATAACTGGTGCATGG 52197
|| |||||||||||||| | |||||||||||| ||
Sbjct 2235 TA-------------TGGCACAACTATAC--------------AGATAACTGGTGCACGG 2267
Query 52198 TTATTAGGATATGGGGTCAGTTAACGGAAGACCTAGTGTATTAAAGTGTCACAGGCTCAA 52257
|||| |||| ||||| ||| ||||||||||||||||||||||||| ||
Sbjct 2268 TTAT-----------ATCAGCTAACGAAAGTCCTAGTGTATTAAAGTGTCACAGGCATAA 2316
Query 52258 TTAAGTGACAGCTGGTTAGAGTAATTGGAGGGATACGGATAGCAACCGTGTAGGGCTCGA 52317
|||||||||||||||||||||||| ||| ||| || | |||||||| ||||
Sbjct 2317 CTAAGTGACAGCTGGTTAGAGTAAT--AAGGTGTAC---TAAC-GTGGTGTAGGGTTCGA 2370
Query 52318 TTCCCTACTGCTCTAT 52333
||||||||||||||||
Sbjct 2371 TTCCCTACTGCTCTAT 2386
>seq2164
Length=27727
Score = 210 bits (232), Expect = 2e-49
Identities = 364/520 (70%), Gaps = 43/520 (8%)
Strand=Plus/Plus
Query 27237 CAATTAAAAGCAGaaatcaataaaaaa-tatcacttaatgcttgataaaaa-aataatat 27294
|||||||||| |||||| ||||||||| ||||| |||| |||| || | ||| | ||
Sbjct 2144 CAATTAAAAGTAGAAATAAATAAAAAAATATCATCTAATATTTGACAACGATAATTA-AT 2202
Query 27295 tttgatataataatatatatagaaataaaGGAGAACTAACACATGGTAGTTAAATTAACA 27354
|||| ||||||| |||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 2203 TTTGGTATAATAGTATATATAGAAATAAAGGAGAACTAACAAATGGTAGTCAAATTAACG 2262
Query 27355 CAAAAACAAGCTGATTATCTTAAAACTTTTGGAA-----------GACa-----aaaaaa 27398
||||||||||||||||||||| |||||||||||| || | ||||||
Sbjct 2263 CAAAAACAAGCTGATTATCTTGAAACTTTTGGAAACCTTGAAGATGAAATAAACAAAAAA 2322
Query 27399 CTTG-GCTTTCTATTATATTTCTCGTTGGGGTTGGGATTGTCTTCTTAAAGATGGTACag 27457
| | |||| | | | || |||||| |||| ||| ||| | |
Sbjct 2323 CGAGCGCTT--TGTCACATCACTCGTT----TTGG----------TTATGGATACAATTG 2366
Query 27458 aaaaaacttacaaagataacgaagaaaaaccatttaatcttgatgaaaaagaaaaaatga 27517
| | | | | || | ||| | | || | | || | || || ||||||
Sbjct 2367 GATAGGCGGCGATAAATGTCCAAGTAGTGCTTTTGAGTGTT-ACGAGCAATTGAAAATGG 2425
Query 27518 taaaTGCTCTAATTAACGGTTATGAAGTTGATGAACCTAAATATAAATTTTATAATTTTT 27577
| | ||| | |||||||||||||||||| ||||||||||| ||| |||||||| ||||
Sbjct 2426 TTGAAGCTGTCATTAACGGTTATGAAGTTATTGAACCTAAATTTAAGTTTTATAACTTTT 2485
Query 27578 CTGATATTACCAGCGTTAGAAGATTATATTATACAGGGAAAAATAGACAATTCACTGAAA 27637
|||||| || | | | | |||||||||| | || | || |||||| || |||
Sbjct 2486 CTGATAGTAGCGGAGGAACTGCATTATATTATGCTGGACAGTCTAAACAATTAAC--AAA 2543
Query 27638 ATT--ATTTTGAAGGTAAAGATATTGAAAAGGATAGCGTTGAATATTTAGCTTTGGAAAG 27695
||| | || | | || || || ||| |||| |||||| ||||||| |
Sbjct 2544 ATTCGAGCAAGATGCTCTTGAAGTTAAAGAGGGGAGCGAGGAATATAAAGCTTTGTTAGC 2603
Query 27696 TTTAGGCTTTCG-TAAAGAAGAAGTATGATAACATCTTTT 27734
|||||| ||||| | |||||||||||||||||||||||||
Sbjct 2604 TTTAGG-TTTCGTTGAAGAAGAAGTATGATAACATCTTTT 2642
Score = 113 bits (124), Expect = 4e-20
Identities = 106/134 (79%), Gaps = 1/134 (1%)
Strand=Plus/Plus
Query 26921 GATGGTGAGCTAGTGGAAGAAGTAAAGGTAGAAAATCCAGTAGAAAGAACGAAAGAATCA 26980
||| | || ||||||||| ||||||||| |||| |||| | |||| |||||||||||
Sbjct 1668 GATAGCGAACTAGTGGAAAAAGTAAAGGCTGAAACTCCAATCGAAACGACGAAAGAATCG 1727
Query 26981 ACACAAGATTTCTTAGACTTAACTaaaaaaaCAAGGAAAGGCAATAGAAAATGATTGAAA 27040
|||| | ||||||||||||| ||||| | | ||||||| | || ||||||||| ||| |
Sbjct 1728 GCACAGGCTTTCTTAGACTTAGCTAAAGAGA-AAGGAAAAGTAACAGAAAATGAGTGATA 1786
Query 27041 AATGGTATGTTGTT 27054
|| || ||||||
Sbjct 1787 AAAAATACGTTGTT 1800
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 415852063574535
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |