Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq549 132 4e-26 >seq549 Length=172529 Score = 132 bits (146), Expect = 4e-26 Identities = 254/372 (68%), Gaps = 2/372 (1%) Strand=Plus/Plus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 |||| || ||| | | || || || |||||| || || || || || || || |||| Sbjct 30475 AAGAGGTCCAAGTCTCGGAGGCGCGTGCTTTTTACGGATTCCAGATCGCGATTGAGAATA 30534 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGC 44033 | || || || ||||||||||||||| | || || || ||||| ||| | |||||| Sbjct 30535 TCCACTCCGAGATGTACAGTCTTCTGTTGGAGACTTATATCAAGGATTCTGAGGAGAAGA 30594 Query 44034 ATCGATTGTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCC 44092 |||| ||||| |||| || ||||| || || |||| | | || ||| |||||| Sbjct 30595 ATCGCCTGTTTCATGCTATCGAAACGGTGCCGTGCG-TGGCTAAGAAGGCACGGTGGGCC 30653 Query 44093 CTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTG 44152 | ||||| | | || ||| | ||| | || || || ||||| ||| Sbjct 30654 TTGCGGTGGATTGACGGGAGCGAGAGTTTCGCGGAAAGGCTAGTTGCTTTTGCTTGCGTG 30713 Query 44153 GAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTG 44212 ||||| || || || || || ||| || |||||||||||||| || || || ||| Sbjct 30714 GAAGGGATATTTTTCTCGGGGAGTTTTTGTGCGATATTTTGGTTAAAAAAGCGTGGGTTG 30773 Query 44213 ATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGAT 44272 ||||| ||| | || ||||| || ||||| || || |||||||| | ||||| ||| Sbjct 30774 ATGCCGGGGCTAACCTTTTCGAACGAGTTGATCTCGCGAGATGAAGGGCTTCATTGTGAT 30833 Query 44273 TTTGCTTGCTTG 44284 || || ||| || Sbjct 30834 TTCGCGTGCCTG 30845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397409424988075