Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq93 116 3e-21 seq663 114 1e-20 seq273 113 4e-20 seq461 98.7 8e-16 seq78 95.1 1e-14 seq2 95.1 1e-14 seq185 84.2 2e-11 >seq93 Length=881566 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| || | ||||| || | || || || || || || |||||||| Sbjct 480773 CCACCCCTCAAGCGAAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 480832 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | || | || ||||||||||| || ||| |||||||||||||||| ||||| || Sbjct 480833 AGTGTACGGCCATCCTCGAGCTGTTTTCCAGCGAAAATGAGACGCTGTTGGTCCGGTGGG 480892 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || |||||| ||| | | || | |||||||| || ||||| Sbjct 480893 ATACCTTCCTTGTCTTGAATCTTGGCTTTGACATTGTCGATAGTGTCTGAGGACTCAACC 480952 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| | |||||||||| |||||||| ||||| ||||| Sbjct 480953 TCGAGGGTTATTGTCTTGCCCGTCAAGGTTTTCACGAAGATCTGCAT 480999 >seq663 Length=136023 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || ||||||||||| ||| || | || | ||||| |||||||| |||||| | Sbjct 60461 TCCTTCTGAATATTGTAATCGGCCAGAGTCCGACCATCTTCTAGCTGTTTTCCGGCGAAG 60520 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || | ||| |||||||||||||| | ||||| || || |||||| ||| | | | Sbjct 60521 ATCAAACGTTGTTGATCCGGCGGGATGCCCTCCTTGTCTTGAATCTTGGCTTTGACGTTG 60580 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||| || || || || || ||||||| ||||| |||||||||||||| Sbjct 60581 TCGATGGTGTCGCTGCTCTCCACCTCAAGGGTTATAGTCTTGCCGGTCAGAGTTTTCACG 60640 Query 27237 AAGATTTGCAT 27247 ||||| ||||| Sbjct 60641 AAGATCTGCAT 60651 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || |||||||| || ||| || | || | |||||||||||||| |||||| | Sbjct 60233 TCCTTCTGAATATTATAATCGGCCAAAGTCCGACCATCTTCGAGCTGTTTTCCGGCGAAG 60292 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || | ||| |||||||||||||| | ||||| ||||| |||||| || | | | Sbjct 60293 ATCAAACGTTGTTGATCCGGCGGGATGCCCTCCTTATCTTGAATCTTGGCCTTGACGTTG 60352 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||| || || || ||||| || || | || || |||| || || ||| Sbjct 60353 TCGATGGTGTCGCTGCTCTCCACCTCTAGGGTAATGGTCTTCCCTGTCAAGGTCTTAACA 60412 Query 27237 AAGATTTGCATAGCT 27251 || || |||||| || Sbjct 60413 AATATCTGCATACCT 60427 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| ||||| || ||||||||||| || | || | ||||||||||| || || Sbjct 59999 GTAGACTCTTTCTGGATATTGTAGTCAGCCAGAGTCCGGCCATCTTCGAGCTGCTTTCCT 60058 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || | ||| |||||||| || || | ||||| || || |||||| || Sbjct 60059 GCAAAGATCAAACGTTGTTGATCAGGTGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTG 60118 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| || || || |||||||| || | ||| || |||| || Sbjct 60119 ACGTTGTCGATGGTGTCGCTGCTCTCTACCTCTAGAGTAATGGTTTTCCCTGTCAAGGTC 60178 Query 27231 TTCACAAAGATTTGCATAGCT 27251 |||||||| || |||||| || Sbjct 60179 TTCACAAATATCTGCATACCT 60199 >seq273 Length=351239 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | |||||| | ||||| || | || || || || || || |||||||| Sbjct 177517 CCACCCCTCAACCGAAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCG 177576 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| | || ||||||||||| || ||| |||||||||||||||| || || || Sbjct 177577 AGCGTGCGGCCATCCTCGAGCTGTTTTCCAGCGAAAATGAGACGCTGTTGGTCTGGTGGG 177636 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| || || || |||||| ||| | | || | ||||||| || ||||| Sbjct 177637 ATACCTTCCTTGTCTTGAATCTTGGCTTTGACATTGTCGATCGTGTCTGAGGACTCAACC 177696 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| | || ||||||| |||||||| ||||| ||||| Sbjct 177697 TCGAGGGTTATTGTCTTACCCGTCAAGGTTTTCACGAAGATCTGCAT 177743 >seq461 Length=207379 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 27057 TCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAA 27116 || || ||||||||||| ||| || | || | ||||| |||||||| |||||| | Sbjct 160145 TCCTTCTGAATATTGTAATCGGCCAAAGTTCGGCCATCTTCCAGCTGTTTTCCGGCGAAG 160086 Query 27117 ATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTT 27176 || ||||||||||||||||| || | || || || || |||||| || | | | Sbjct 160085 ATTAGACGCTGTTGATCCGGTGGGATGCCTTCCTTGTCTTGAATCTTGGCCTTGACGTTG 160026 Query 27177 TCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACA 27236 || | ||||| || || || || ||||| || | ||||| || || |||||||| Sbjct 160025 TCGATGGTGTCGCTGCTCTCCACCTCCAGAGTGATGGTCTTGCCGGTGAGGGTTTTCACG 159966 Query 27237 AAGATTTGCATA 27248 ||||| |||||| Sbjct 159965 AAGATCTGCATA 159954 >seq78 Length=1009284 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||||||| | ||||| || || |||||||| ||||| Sbjct 220721 CCACCACGCAGACGAAGCACCAAATGCAGAGTAGATTCCTTCTGAATATTATAGTCAGCA 220780 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | ||||| |||||||| || || |||| || | || |||||||| || Sbjct 220781 AGGGTCCTTCCATCTTCAAGCTGTTTGCCAGCAAAAATAAGCCTTTGCTGATCCGGTGGG 220840 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| | |||| | || | ||||| | | ||| || Sbjct 220841 ATCCCTTCCTTGTCCTGAATCTTGGTCTTCACATTGTCAATTGTGTCAGAGCTTTCCACC 220900 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||| ||||| || ||||| ||||||||||| ||||| Sbjct 220901 TCAAGGGTAATAGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 220947 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||||||| | ||||| || || |||||||| ||||| Sbjct 201117 CCACCACGCAGACGAAGCACCAAATGCAGAGTAGATTCCTTCTGAATATTATAGTCAGCA 201176 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | | ||||| |||||||| || || | || || | || |||||||| || Sbjct 201177 AGGGTCCTTCCATCTTCAAGCTGTTTGCCAGCAAAGATAAGCCTTTGCTGATCCGGTGGG 201236 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || || || |||||| | |||| | || | ||||| | | ||| || Sbjct 201237 ATCCCTTCCTTGTCCTGAATCTTGGTCTTCACATTGTCAATTGTGTCAGAGCTTTCCACC 201296 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||| ||||| || ||||| ||||||||||| ||||| Sbjct 201297 TCAAGGGTAATAGTCTTGCCAGTAAGAGTCTTCACAAAGATCTGCAT 201343 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||||||| | || || || || |||||||||||||| Sbjct 220265 CCACCACGCAGACGGAGCACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAGTCTGCA 220324 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || |||||||| || || |||| | | || || ||||| || Sbjct 220325 AGGGTGCGACCATCCTCCAGCTGTTTTCCAGCAAAAATCAACCTTTGCTGGTCCGGTGGA 220384 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | || || ||||| |||||| |||| | | | || | ||| || | | || || Sbjct 220385 ATCCCTTCCTTATCTTGGATCTTTGTTTTGACGTTATCAATAGTATCCGAGCTCTCCACC 220444 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || |||| ||| || || || ||||||||||| || ||||| Sbjct 220445 TCCAAGGTGATAGTTTTTCCAGTGAGGGTTTTCACAAATATCTGCAT 220491 >seq2 Length=8082884 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | ||| || | ||||| || | || || || || || || |||||||| Sbjct 7139373 CCACCCCTCAAGCGAAGCACCAAGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCG 7139432 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || ||||| ||||| || ||| |||| ||||||||||| || || || Sbjct 7139433 AGGGTGCGACCATCCTCGAGTTGTTTCCCAGCGAAAATAAGACGCTGTTGGTCTGGAGGG 7139492 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| ||| | | || | ||||||| | ||||| Sbjct 7139493 ATGCCCTCCTTGTCCTGAATCTTGGCTTTGACATTGTCGATTGTGTCTGATGACTCAACC 7139552 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| | || ||||||| || ||||| ||||| ||||| Sbjct 7139553 TCGAGGGTTATGGTCTTTCCCGTCAAGGTCTTCACGAAGATCTGCAT 7139599 >seq185 Length=543210 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || | ||| || | |||||||| | ||||| || || ||||| |||||||| Sbjct 498447 TGCCACCTCTCAATCGGAGCACCAAATGAAGGGTAGACTCCTTCTGAATGTTGTAGTCAG 498388 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || | || || || || || || || ||||||| | ||| || || || | Sbjct 498387 CAAGGGTACGGCCATCCTCAAGTTGCTTGCCAGCAAAAATGAGCCTCTGCTGGTCTGGTG 498328 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | || | |||||| | | ||| | Sbjct 498327 GGATCCCCTCCTTGTCCTGGATCTTGGCCTTTACATTATCAATAGTGTCAGAGCTTTCCA 498268 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || ||||| || || ||||||||||| Sbjct 498267 CCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACGAAGATTTGCAT 498219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424884604991880