Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Populus_20euphratica_20[refseq_20GCF_5F000495115.1_202014-08-12] 9,615 sequences; 496,032,534 total letters Query= NC_027987.1 Length=29508 Score E Sequences producing significant alignments: (Bits) Value seq2164 161 2e-35 >seq2164 Length=27727 Score = 161 bits (178), Expect = 2e-35 Identities = 326/484 (67%), Gaps = 0/484 (0%) Strand=Plus/Plus Query 1709 AATGATTAAACTAGATGAAAAGAAAATACGCAAAGGTAAAGCAGTTGGGCTTCCTTATGT 1768 |||| ||| |||| || |||||||| | ||||||||| | |||| | || || Sbjct 5874 AATGCTTAGTTTAGACGAGAAGAAAATCAGAAAAGGTAAACCTATTGGATTACCATACCA 5933 Query 1769 TGGTAGTAAAAAGAAAATCAGTAAAAAGATTGTTGAAATAATTAAACAAAACTTTGGCAC 1828 || || || || || || || || || || ||||| || || ||||| ||||||||||| Sbjct 5934 AGGAAGCAAGAAAAAGATAAGCAAGAAAATAGTTGAGATTATCAAACAGAACTTTGGCAC 5993 Query 1829 AGATAAGACAGTTTATGACGTATTCGGTGGCGGTGGTGCAATTACTGCTGAACTAATGAT 1888 ||| ||| | | || ||| | ||||| || || || |||||||| | ||| || | Sbjct 5994 AGACAAGCCGATATACGACATCTTCGGAGGAGGCGGAGCAATTACATCCGAATGTATTTT 6053 Query 1889 TAACGGTATAGATGTTGTTTATAATGACTTAGATAAAACAATTACTGACATGTTTAACCG 1948 || || |||| || |||||| |||||||| || || || || ||| | || Sbjct 6054 AAATGGCTTAGAAGTATATTATAACGACTTAGACAAGGATATAACCAACGCTTTTGAACG 6113 Query 1949 TGTTTTAAGCCAAGATAGAGAATGGATCAAAACATTAATTGTTAGTCGTGATGAGTTCTT 2008 ||| | ||||| | || ||||| |||| | |||||| ||| ||||| Sbjct 6114 AGTTATCTCTCAAGACCGTGAGTGGATTAAAAGCCTTATTGTTTCACGTACAGAGTTTAC 6173 Query 2009 AAATATTAGAGATAAAGAAAACAAAACAGTTGATGACGAATTGAAGTTGTTAGTCAATAG 2068 | |||| || ||||||||||| ||| |||||| ||||||||| | | || Sbjct 6174 CGAGATTAAGGAGAAAGAAAACAAGACAACAGATGACTTTTTGAAGTTGCTGATTAACTC 6233 Query 2069 TTTTGGTAATAATAGAATAGGATATTTATATAGTAATGAGATTAGCGATATAAAGTATAA 2128 ||| |||||||| | | || ||||||||| ||| || ||| ||| |||| ||||| Sbjct 6234 TTTCGGTAATAAAAAGAGAGATTATTTATATTCTAAAGAAATTTCAGATTTAAAATATAA 6293 Query 2129 GCTGGTTGTTGAAATTATTGAAAACGAAGACACTTTTAAAAAATATAAGCAAACAGAAAC 2188 || | | ||||| |||||||| | ||| ||||| ||||| || || |||| Sbjct 6294 TCTAGCTAAAGAAATAATTGAAAAGCATGACGTTTTTAGTGGTTATAAACAGACCAAAAC 6353 Query 2189 TTAT 2192 ||| Sbjct 6354 ATAT 6357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94293232546100